Browse Element(s) Details


Os.52109.1.S1_at

Description gb:AK064738.1
DB_XREF= gi:32974756
TID=Os.52109.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52109 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-120-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-C12, full insert sequence.
FL= gb:AK064738.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1262011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g12570Os.5312.1.S1_at11/119+7204143..7207198Ubiquitin-conjugating enzyme spm2, putative, expressed
LOC_Os09g12580NANA9+7215986..7216375hypothetical protein
LOC_Os09g12590NANA9+7217962..7219515Sugar transporter family protein, expressed
LOC_Os09g12600Os.4694.1.S1_at11/119+7221188..7224657Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative, expressed
LOC_Os09g12610OsAffx.29820.1.S1_at11/119+7225823..7226459hypothetical protein
LOC_Os09g12620Os.52109.1.S1_at11/119+7230651..7231571expressed protein
LOC_Os09g12630Os.55367.1.S1_at10/119+7232384..7233198expressed protein
LOC_Os09g12640OsAffx.6256.1.S1_at11/119+7234109..7234508hypothetical protein
LOC_Os09g12650OsAffx.6257.1.S1_at11/119+7239336..7243604Pyrophosphate-fructose 6-phosphate 1-phosphotransferase alpha subunit, putative
LOC_Os09g12660Os.3122.1.S1_at11/119+7244359..7248813Glucose-1-phosphate adenylyltransferase small subunit, chloroplast precursor, putative, expressed
LOC_Os09g12670OsAffx.24421.1.S1_at7/119+7250983..7251387transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52109.1.S1_at--922--2171Chr09:7231209..7231233 (25 bp)
ACACGGTGATCACGAGCAGGTGCAA
LOC_Os09g12620
Os.52109.1.S1_at--692--7451Chr09:7230898..7230922 (25 bp)
GTGTCCGCGTTCTTGATGCTTATCG
LOC_Os09g12620
Os.52109.1.S1_at--125--10151Chr09:7230878..7230902 (25 bp)
TATCGTGTCCTGAATGATCGACCCC
LOC_Os09g12620
Os.52109.1.S1_at--1085--5811Chr09:7230859..7230883 (25 bp)
GACCCCATCGATCATATGTATATCT
LOC_Os09g12620
Os.52109.1.S1_at--1119--10471Chr09:7230830..7230854 (25 bp)
TTAATTAATTTCTGCACTGCACAGG
LOC_Os09g12620
Os.52109.1.S1_at--1093--3811Chr09:7230814..7230838 (25 bp)
CTGCACAGGGTGGTACGACGTAATT
LOC_Os09g12620
Os.52109.1.S1_at--193--3151Chr09:7230772..7230796 (25 bp)
AATTAACCTGTTATTTCCGCTCTTG
LOC_Os09g12620
Os.52109.1.S1_at--274--9591Chr09:7230752..7230776 (25 bp)
TCTTGCAGTTGCTTGTGGATGTGGT
LOC_Os09g12620
Os.52109.1.S1_at--354--8591Chr09:7230731..7230755 (25 bp)
TGGTAGTCAAATTCGGAGCTCCTGT
LOC_Os09g12620
Os.52109.1.S1_at--227--5911Chr09:7230716..7230740 (25 bp)
GAGCTCCTGTAATCCGAATGCATGT
LOC_Os09g12620
Os.52109.1.S1_at--306--9311Chr09:7230669..7230693 (25 bp)
TCCCAGAAGATTGCCACCATTAACA
LOC_Os09g12620
Target Sequence 
ACACGGTGATCACGAGCAGGTGCAAGGGGCCGATGTACCCGCCGGCGCTGTGCTGCCAGGCGCTCAAGGACCTGGCGTGC
CCCTTCACCGCCTACATCAACGACGCCCAGACCACCTGCGCCGCCTCCATGTTCAGCTACATCAACCTCTACGGCAAGTA
CCCGCCGGGCCTCTTCGCCAACACCTGCAAGGAGGGCGCCAATGGCCTCGAGTGCCCCGAGGACACCCCCCAGATGAAGC
CCGGAGAGGACAAGGCCGCCTCCTCCGCCGCCGCCATTGTCGCCGCCGTCGCGCGGCCCGTGCTCGCCGCCGTGTCCGCG
TTCTTGATGCTTATCGTGTCCTGAATGATCGACCCCATCGATCATATGTATATCTGAAATTAATTAATTTCTGCACTGCA
CAGGGTGGTACGACGTAATTAATCTAATTAATTAATTAATTAACCTGTTATTTCCGCTCTTGCAGTTGCTTGTGGATGTG
GTAGTCAAATTCGGAGCTCCTGTAATCCGAATGCATGTGTTTATCATTATATGCTAGAGATCCCAGAAGATTGCCACCAT
TAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52109.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis