Browse Element(s) Details


Os.52193.1.S1_at

Description gb:AK065546.1
DB_XREF= gi:32975564
TID=Os.52193.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52193 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013031G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013031G01, full insert sequence.
FL= gb:AK065546.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2417011/11Galactose binding lectin domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g24130OsAffx.19794.1.S1_at10/1112+13732364..13735966hypothetical protein
LOC_Os12g24130Os.55313.1.S1_at1/1112+13732364..13735966hypothetical protein
LOC_Os12g24140OsAffx.31860.1.S1_at11/1112+13736781..13737740Protein kinase domain containing protein
LOC_Os12g24150OsAffx.7684.1.S1_at11/1112+13743785..13744213hypothetical protein
LOC_Os12g24160Os.49985.1.S1_at2/1112+13747297..13751274retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g24160OsAffx.17730.1.S1_at1/1112+13747297..13751274retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g24170Os.52193.1.S1_at11/1112+13758669..13761266Galactose binding lectin domain containing protein, expressed
LOC_Os12g24184Os.50840.1.S1_at10/1112+13762038..13779623Beta-galactosidase precursor, putative, expressed
LOC_Os12g24184OsAffx.29203.3.A1_x_at1/1112+13762038..13779623Beta-galactosidase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004565molecular_functionbeta-galactosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52193.1.S1_at--918--3791Chr12:13759899..13759923 (25 bp)
CTCGCTGATATCACTGGAGGCTCAT
LOC_Os12g24170
Os.52193.1.S1_at--192--4751Chr12:13759896..13759920 (25 bp)
GCTGATATCACTGGAGGCTCATTAT
LOC_Os12g24170
Os.52193.1.S1_at--1023--371Chr12:13759890..13759914 (25 bp)
ATCACTGGAGGCTCATTATGCCAAA
LOC_Os12g24170
Os.52193.1.S1_at--301--4831Chr12:13759880..13759904 (25 bp)
GCTCATTATGCCAAAACAGTCTGTT
LOC_Os12g24170
Os.52193.1.S1_at--357--2411Chr12:13759868..13759892 (25 bp)
AAAACAGTCTGTTCAAGAATTTCAG
LOC_Os12g24170
Os.52193.1.S1_at--95--10211Chr12:13759838..13759862 (25 bp)
TATTATCCTCCCCTTTCTGCCTGGT
LOC_Os12g24170
Os.52193.1.S1_at--169--10311Chr12:13759825..13759849 (25 bp)
TTTCTGCCTGGTCGCATCTTTCCAG
LOC_Os12g24170
Os.52193.1.S1_at--197--8591Chr12:13759817..13759841 (25 bp)
TGGTCGCATCTTTCCAGTGGCCGTG
LOC_Os12g24170
Os.52193.1.S1_at--607--10291Chr12:13759807..13759831 (25 bp)
TTTCCAGTGGCCGTGCCTCAGTGAA
LOC_Os12g24170
Os.52193.1.S1_at--85--3471Chr12:13759803..13759827 (25 bp)
CAGTGGCCGTGCCTCAGTGAATGCA
LOC_Os12g24170
Os.52193.1.S1_at--874--8031Chr12:13758894..13758918 (25 bp)
GGAGATTTCCCTTGAATTGGTTATA
LOC_Os12g24170
Target Sequence 
CTCGCTGATATCACTGGAGGCTCATTATGCCAAAACAGTCTGTTCAAGAATTTCAGAAAATTATTATCCTCCCCTTTCTG
CCTGGTCGCATCTTTCCAGTGGCCGTGCCTCAGTGAATGCAGCAACTCCAGAACTGCGCTTGCAGTGTGACGATGGGCAT
GTGATCTCTGAGATTACATTTGCAAGCTATGGAACTCCTTCAGGTGGCTGCCTGAACTTCTCCAAAGGGAATTGCCATGC
ATCGAGCACTCTGGATTTGGTGACAGAGGCATGTGTTGGCAACACCAAATGTGCTATCAGTGTTTCCAACGATGTCTTTG
GTGATCCATGCCGAGGAGTCCTCAAAGATTTAGCAGTTGAGGCCAAGTGTTCCCCACCATCAACCACCAAAGAGCCTCGC
GGTGAGATGTGATCTGGAATTCATCATGGCACATCTGTTGCGAACAAGGTAGGGCTCACTTAACTCTGCAATGGCACACA
CAGCATTGCTGTACGCGGTTTGTCCCTGTACATCCATGTGTAAAAAGATTACCTAAAAATTGAATGAAATGTGAATAAAA
ATGCAAAGGAGATTTCCCTTGAATTGGTTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52193.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis