Browse Element(s) Details


Os.52237.1.S1_at

Description gb:AK065799.1
DB_XREF= gi:32975817
TID=Os.52237.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52237 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013037E18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013037E18, full insert sequence.
FL= gb:AK065799.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1725011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g17230OsAffx.16307.1.S1_at11/117+10153757..10158080B3 DNA binding domain containing protein, expressed
LOC_Os07g17240Os.35344.3.S1_x_at9/117+10160360..10166992transposon protein, putative, Mutator sub-class
LOC_Os07g17240Os.35344.18.S1_x_at9/117+10160360..10166992transposon protein, putative, Mutator sub-class
LOC_Os07g17240OsAffx.22940.2.S1_s_at8/117+10160360..10166992transposon protein, putative, Mutator sub-class
LOC_Os07g17240OsAffx.22940.3.S1_x_at6/117+10160360..10166992transposon protein, putative, Mutator sub-class
LOC_Os07g17240OsAffx.22940.5.S1_x_at4/117+10160360..10166992transposon protein, putative, Mutator sub-class
LOC_Os07g17240OsAffx.22940.1.S1_s_at2/117+10160360..10166992transposon protein, putative, Mutator sub-class
LOC_Os07g17250Os.52237.1.S1_at11/117+10171462..10175056NB-ARC domain containing protein, expressed
LOC_Os07g17260Os.10226.1.A1_at11/117+10176922..10186734retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g17260Os.45957.4.S1_x_at6/117+10176922..10186734retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g17260Os.24327.1.A1_at1/117+10176922..10186734retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g17260Os.49134.1.S1_at1/117+10176922..10186734retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g17270Os.49134.2.S1_x_at11/117+10189134..10196114retrotransposon protein, putative, unclassified
LOC_Os07g17270Os.49134.2.S1_at11/117+10189134..10196114retrotransposon protein, putative, unclassified
LOC_Os07g17270Os.31662.1.S1_at1/117+10189134..10196114retrotransposon protein, putative, unclassified
LOC_Os07g17270Os.55230.1.S1_x_at1/117+10189134..10196114retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52237.1.S1_at--292--6571Chr07:10174470..10174494 (25 bp)
GATTCAGGATTCTTCCCTTGGCATG
LOC_Os07g17250
Os.52237.1.S1_at--839--8491Chr07:10174488..10174512 (25 bp)
TGGCATGCTGGTGTCAATTACGATC
LOC_Os07g17250
Os.52237.1.S1_at--1161--3131Chr07:10174503..10174527 (25 bp)
AATTACGATCGATGACTGCCAAAAT
LOC_Os07g17250
Os.52237.1.S1_at--562--431Chr07:10174544..10174568 (25 bp)
ATCTTGGTGATCTTCCATCTCTTAA
LOC_Os07g17250
Os.52237.1.S1_at--167--2731Chr07:10174693..10174717 (25 bp)
AAGCAAGGACGATTTCCCACGGCTT
LOC_Os07g17250
Os.52237.1.S1_at--54--3651Chr07:10174715..10174739 (25 bp)
CTTCGTTGTCTCTCTGTCAGTAGAT
LOC_Os07g17250
Os.52237.1.S1_at--441--1511Chr07:10174776..10174800 (25 bp)
AGCAGCTCAGGTGTTGCAGTACCTC
LOC_Os07g17250
Os.52237.1.S1_at--618--5031Chr07:10174791..10174815 (25 bp)
GCAGTACCTCAGACCCAATTCAAAT
LOC_Os07g17250
Os.52237.1.S1_at--627--5371Chr07:10174927..10174951 (25 bp)
GAAGAACTACCACCTCCTGGAAGAT
LOC_Os07g17250
Os.52237.1.S1_at--536--8511Chr07:10174944..10174968 (25 bp)
TGGAAGATTCCCATCCCTGAAACAT
LOC_Os07g17250
Os.52237.1.S1_at--683--7091Chr07:10174993..10175017 (25 bp)
GTCAAACTAGTTGGGCCTGAATTTC
LOC_Os07g17250
Target Sequence 
GATTCAGGATTCTTCCCTTGGCATGCTGGTGTCAATTACGATCGATGACTGCCAAAATTGTAATGAGATCCCATATCTTG
GTGATCTTCCATCTCTTAAATATCTCTTCATACAGAAAATGTATGTTGTTGAAAGCTTTGGACAAAGAAGTAACTCTTTG
ACTACTGATGGGAGATGTACTGAATCTTTGGGAGATATACTCTTTGCAATTCTGGAATGGAACAAGCAAGGACGATTTCC
CACGGCTTCGTTGTCTCTCTGTCAGTAGATGCCCAAAACTAAGTAATTTGCAGCGACGAATGACACAGCAGCTCAGGTGT
TGCAGTACCTCAGACCCAATTCAAATCTGGAGGAGCTCATCATGAAAGGTTATAATGGATCATCATTCCCATCATGGGTA
GGGTCTCTACCTTTGGACAGGTTAGCTTCAATAGAACTCAAAGACTGACAAAATTGCGAAGAACTACCACCTCCTGGAAG
ATTCCCATCCCTGAAACATGATGTGATACAGTCACTACCAAGTGTCAAACTAGTTGGGCCTGAATTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52237.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis