Browse Element(s) Details


Os.52253.1.S1_at

Description gb:AK065906.1
DB_XREF= gi:32975924
TID=Os.52253.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52253 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013050M06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013050M06, full insert sequence.
FL= gb:AK065906.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2842011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g28390OsAffx.21330.1.S1_at1/1111+15840149..15841075hypothetical protein
LOC_Os11g28400NANA11+15842208..15847228retrotransposon protein, putative, unclassified
LOC_Os11g28410Os.7544.1.S1_at9/1111+15847738..15858186retrotransposon protein, putative, unclassified
LOC_Os11g28410Os.5217.1.S1_at1/1111+15847738..15858186retrotransposon protein, putative, unclassified
LOC_Os11g28420Os.52253.1.S1_at11/1111+15864770..15865563expressed protein
LOC_Os11g28420OsAffx.8000.1.S1_x_at1/1111+15864770..15865563expressed protein
LOC_Os11g28430OsAffx.31183.1.S1_at10/1111+15867195..15869881hypothetical protein
LOC_Os11g28430OsAffx.18697.2.A1_at7/1111+15867195..15869881hypothetical protein
LOC_Os11g28440OsAffx.19052.1.S1_at10/1111+15873308..15874748hypothetical protein
LOC_Os11g28450OsAffx.19053.1.S1_at11/1111+15876188..15876945hypothetical protein
LOC_Os11g28460OsAffx.8934.1.S1_x_at1/1111+15877993..15878668hypothetical protein
LOC_Os11g28470OsAffx.19055.1.S1_at11/1111+15883922..15885418hypothetical protein
LOC_Os11g28480OsAffx.31184.1.S1_at10/1111+15886678..15893723expressed protein
LOC_Os11g28480Os.3448.1.S1_a_at1/1111+15886678..15893723expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52253.1.S1_at--1037--8051Chr11:15864991..15865015 (25 bp)
GGAGAGCCATCGGTGGCACCCCTTT
LOC_Os11g28420
Os.52253.1.S1_at--362--8431Chr11:15864978..15865002 (25 bp)
TGGCACCCCTTTTTTTATACGCTGT
LOC_Os11g28420
Os.52253.1.S1_at--109--8031Chr11:15864912..15864936 (25 bp)
GGAGGTGTCGCTAGCGAAAATAATT
LOC_Os11g28420
Os.52253.1.S1_at--206--2271Chr11:15864895..15864919 (25 bp)
AAATAATTTTTGCAAGCCTTTGCGT
LOC_Os11g28420
Os.52253.1.S1_at--533--2651Chr11:15864882..15864906 (25 bp)
AAGCCTTTGCGTATAGGCGGTCCTT
LOC_Os11g28420
Os.52253.1.S1_at--63--5531Chr11:15864846..15864870 (25 bp)
GAAAAACTATTTTTGGCGCCTGCAA
LOC_Os11g28420
Os.52253.1.S1_at--1156--10171Chr11:15864839..15864863 (25 bp)
TATTTTTGGCGCCTGCAAAAACCTT
LOC_Os11g28420
Os.52253.1.S1_at--413--10031Chr11:15864808..15864832 (25 bp)
TAGTAGTGCTATTCAATTCAAACGA
LOC_Os11g28420
Os.52253.1.S1_at--554--131Chr11:15864793..15864817 (25 bp)
ATTCAAACGAAAATGCATGGACGAG
LOC_Os11g28420
Os.52253.1.S1_at--224--631Chr11:15864781..15864805 (25 bp)
ATGCATGGACGAGTACAAGCTGTAT
LOC_Os11g28420
Os.52253.1.S1_at--902--4051Chr11:15864772..15864796 (25 bp)
CGAGTACAAGCTGTATTGGGTGATT
LOC_Os11g28420
Target Sequence 
GGAGAGCCATCGGTGGCACCCCTTTTTTTATACGCTGTAATGTTTTTCGCAGGCGGGTGAATCTACCGCCTGCGAAGATG
GAGGTGTCGCTAGCGAAAATAATTTTTGCAAGCCTTTGCGTATAGGCGGTCCTTTCCCCCACCTGGAAAAACTATTTTTG
GCGCCTGCAAAAACCTTTTTTTCTAGTAGTGCTATTCAATTCAAACGAAAATGCATGGACGAGTACAAGCTGTATTGGGT
GATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52253.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis