Browse Element(s) Details


Os.52256.1.S1_at

Description gb:AK065929.1
DB_XREF= gi:32975947
TID=Os.52256.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52256 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013044N22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013044N22, full insert sequence.
FL= gb:AK065929.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0363011/11acyl-activating enzyme 14, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g03620OsAffx.16811.1.S1_at11/118+1703682..1708669TPR Domain containing protein
LOC_Os08g03620OsAffx.16811.2.S1_at2/118+1703682..1708669TPR Domain containing protein
LOC_Os08g03630Os.52256.1.S1_at11/118+1710152..1713537acyl-activating enzyme 14, putative, expressed
LOC_Os08g03640Os.12290.1.S1_at11/118+1714065..171679560S acidic ribosomal protein P0, putative, expressed
LOC_Os08g03650Os.10429.1.S1_at11/118+1717285..1723595transposon protein, putative, Mutator sub-class, expressed
LOC_Os08g03660OsAffx.22940.2.S1_s_at11/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660OsAffx.22940.1.S1_s_at11/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660OsAffx.22940.5.S1_at11/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660Os.35344.18.S1_x_at9/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660OsAffx.22940.3.S1_x_at9/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660OsAffx.22940.5.S1_x_at8/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660Os.35344.3.S1_x_at8/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660OsAffx.22940.2.S1_at8/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660OsAffx.31552.2.S1_at1/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03670Os.12605.1.S1_s_at11/118+1738321..1742818Galactosyltransferase family, putative, expressed
LOC_Os08g03670OsAffx.16812.2.S1_at11/118+1738321..1742818Galactosyltransferase family, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009698biological_processphenylpropanoid metabolism
GO:0016207molecular_function4-coumarate-CoA ligase activity
GO:0016208molecular_functionAMP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52256.1.S1_at--24--2391Chr08:1711213..1711237 (25 bp)
AAACTGGTAATCTGTGGCTCATGGG
LOC_Os08g03630
Os.52256.1.S1_at--267--10031Chr08:1711022..1711046 (25 bp)
TAGAATCTGTACTGTCTCAGCACCC
LOC_Os08g03630
Os.52256.1.S1_at--492--1491Chr08:1711004..1711028 (25 bp)
AGCACCCAGGTCTAGCTAAAGCCGT
LOC_Os08g03630
Os.52256.1.S1_at--210--31Chr08:1710975..1710999 (25 bp)
ATTGGCATGCCGGATAGTCGTCTCG
LOC_Os08g03630
Os.52256.1.S1_at--43--2251Chr08:1710944..1710968 (25 bp)
AAATTGTTGCCTGTGTTAGCATCAG
LOC_Os08g03630
Os.52256.1.S1_at--85--3851Chr08:1710860..1710884 (25 bp)
CTGCACAGATGCTTCAAGACCATTG
LOC_Os08g03630
Os.52256.1.S1_at--8--6091Chr08:1710389..1710413 (25 bp)
GAGTAAACCATTTCCAGTGACAACA
LOC_Os08g03630
Os.52256.1.S1_at--562--911Chr08:1710288..1710312 (25 bp)
AGGCTATTGTTAGTGACCATGGCAG
LOC_Os08g03630
Os.52256.1.S1_at--916--1491Chr08:1710255..1710279 (25 bp)
AGCACATTATGTTCTTCATCTTCAG
LOC_Os08g03630
Os.52256.1.S1_at--681--5111Chr08:1710218..1710242 (25 bp)
GCACATCACAGCAATATCCCAATTT
LOC_Os08g03630
Os.52256.1.S1_at--227--5051Chr08:1710168..1710192 (25 bp)
GCAGAATGCTATCCTACTTGTTATT
LOC_Os08g03630
Target Sequence 
AAACTGGTAATCTGTGGCTCATGGGGCGACAAAAGGGAAGAATCAAAACTGGAGGTGAAAATGTGTACCCAGAGGAGGTA
GAATCTGTACTGTCTCAGCACCCAGGTCTAGCTAAAGCCGTGGTGATTGGCATGCCGGATAGTCGTCTCGGGGAGAAAAT
TGTTGCCTGTGTTAGCATCAGGGATGGCTGGAACTGGGTTGATGCAAGAGCTGTGCACAAGGGGGAAGGCAGAGAAGTCT
CTGCACAGATGCTTCAAGACCATTGCCGTACAAACAAATTGAGCAGATTCAAGGTGCCAAGGATATATTATCAGTGGAGT
AAACCATTTCCAGTGACAACAACAGGGAAAATTAGAAGAGAACAGTTAAAGGCTGAGATATTAGCAAGCATGAAACTACA
CAGCAATTTATAGTCTTAGGCTATTGTTAGTGACCATGGCAGCACAAAAAAGCACATTATGTTCTTCATCTTCAGCTGGT
GGTACATGCACATCACAGCAATATCCCAATTTTGGTCTCTCTTTTTCATTTTTACAGGCAGAATGCTATCCTACTTGTTA
TT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52256.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis