Browse Element(s) Details


Os.52273.1.S1_at

Description gb:AK066012.1
DB_XREF= gi:32976030
TID=Os.52273.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52273 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013048E19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013048E19, full insert sequence.
FL= gb:AK066012.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4019010/11Thioredoxin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40140OsAffx.4571.1.S1_at11/115+23491852..23493428retrotransposon protein, putative, unclassified
LOC_Os05g40150OsAffx.27252.1.S1_at11/115+23498045..23502194NB-ARC domain containing protein
LOC_Os05g40160Os.50474.1.S1_at11/115+23503562..23507180NB-ARC domain containing protein, expressed
LOC_Os05g40170Os.4820.1.S1_at11/115+23509834..23512004expressed protein
LOC_Os05g40180OsAffx.27253.1.S1_x_at11/115+23515822..23517941Protein kinase domain containing protein, expressed
LOC_Os05g40180Os.51130.1.S1_at11/115+23515822..23517941Protein kinase domain containing protein, expressed
LOC_Os05g40190OsAffx.15036.1.S1_s_at11/115+23517742..23521841Thioredoxin family protein, expressed
LOC_Os05g40190Os.51130.2.S1_at11/115+23517742..23521841Thioredoxin family protein, expressed
LOC_Os05g40190Os.52273.1.S1_at10/115+23517742..23521841Thioredoxin family protein, expressed
LOC_Os05g40190OsAffx.15036.1.S1_at10/115+23517742..23521841Thioredoxin family protein, expressed
LOC_Os05g40200Os.48975.1.S1_at10/115+23522217..23527785leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os05g40220Os.47852.1.S1_at11/115+23539525..23543828retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005829cellular_componentcytosol
GO:0005489molecular_functionelectron transporter activity
GO:0016671molecular_functionoxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52273.1.S1_at--753--5031Chr05:23519754..23519778 (25 bp)
GCAGCACCAACCTGGCAATAGGAAG
LOC_Os05g40190
Os.52273.1.S1_at--609--2492Chr06:12181534..12181558 (25 bp)
AACATGCTACTAGATTGGATTTTTT
NONE
Os.52273.1.S1_at--802--7392Chr06:12181479..12181503 (25 bp)
GTGATGATTGCTATTACATGTCTTT
NONE
Os.52273.1.S1_at--835--2112Chr06:12181464..12181488 (25 bp)
ACATGTCTTTTGTTAGCTGTGTAAA
NONE
Os.52273.1.S1_at--452--2373Chr07:17715609..17715644 (25 bp)
AAACCATGCCCAAATTCTGTCTTTT
NONE
Os.52273.1.S1_at--16--7871NONE
GGTATGATTATCTTTTCGCCAGAGA
NONE
Os.52273.1.S1_at--1043--10352Chr06:12181221..12181244 (24 bp)
TTTTCGCCAGAGATGTAACACCGTC
NONE
Os.52273.1.S1_at--772--2471Chr05:23519394..23519418 (25 bp)
AACACCGTCAATATGTCCATCCAAA
LOC_Os05g40190
Os.52273.1.S1_at--978--1831Chr05:23519266..23519290 (25 bp)
ACGAAATTGCCCCTTAACCAGATCA
LOC_Os05g40190
Os.52273.1.S1_at--289--3371Chr05:23519256..23519280 (25 bp)
CCCTTAACCAGATCACTACCATGAA
LOC_Os05g40190
Os.52273.1.S1_at--434--2031Chr05:23519242..23519266 (25 bp)
ACTACCATGAACAGGATCTTGTCCC
LOC_Os05g40190
Target Sequence 
GCAGCACCAACCTGGCAATAGGAAGAAGCAACATGCTACTAGATTGGATTTTTTTGACCTCATGATTTGGATTTGCTTGA
TTTTGTGATGATTGCTATTACATGTCTTTTGTTAGCTGTGTAAAAACCATGCCCAAATTCTGTCTTTTTTTTTCTTTTGC
AAAATATACAAATTTTATCAAATTTGTCGCAAAATTATATTATGTCAAAAATTTTAATCTTCTATAAAAAATTGTCATAT
TTGCAAAAGTTTGTGAAAAATGCAATGTAAAAATGGGGGCAAATACACAATTATTGAATAAACATTCAGACAAATATTCA
ATATCAAATAGGGGTATGATTATCTTTTCGCCAGAGATGTAACACCGTCAATATGTCCATCCAAAGTAGGGGTAAAATTT
GCTTTAATTTCAAAAAAGTAGGGGTAAAAACGAAAACCCTAAAAAAACAGGGGTAAAATCAATATTGAAGATGAAAGTAG
GGGCAAGAACGAAATTGCCCCTTAACCAGATCACTACCATGAACAGGATCTTGTCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52273.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis