Browse Element(s) Details


Os.52284.1.S1_at

Description gb:AK073899.1
DB_XREF= gi:32983922
TID=Os.52284.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52284 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033072H18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033072H18, full insert sequence.
FL= gb:AK073899.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3582011/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35780NANA2+21497115..21499620transposon protein, putative, Mutator sub-class
LOC_Os02g35790OsAffx.24589.1.S1_at11/112+21501175..21501640hypothetical protein
LOC_Os02g35800NANA2+21502794..21505423retrotransposon protein, putative, unclassified
LOC_Os02g35810OsAffx.24590.1.S1_at11/112+21507163..21507769hypothetical protein
LOC_Os02g35820Os.52284.1.S1_at11/112+21512898..21517682retrotransposon protein, putative, unclassified, expressed
LOC_Os02g35820Os.55663.1.S1_at11/112+21512898..21517682retrotransposon protein, putative, unclassified, expressed
LOC_Os02g35820Os.52284.2.S1_x_at11/112+21512898..21517682retrotransposon protein, putative, unclassified, expressed
LOC_Os02g35830Os.16973.1.S1_at11/112+21520020..21523069expressed protein
LOC_Os02g35840Os.7921.1.S1_at11/112+21523733..21526921expressed protein
LOC_Os02g35849OsAffx.13875.1.S1_at2/112+21530597..21532263NA
LOC_Os02g35860Os.17728.1.S1_at10/112+21537741..21542976expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52284.1.S1_at--818--6551Chr02:21517122..21517146 (25 bp)
GATTAATATTCCTCTATGCCTACAG
LOC_Os02g35820
Os.52284.1.S1_at--48--591Chr02:21517186..21517210 (25 bp)
ATGCCACCTCCAGAAGATTGCGTAA
LOC_Os02g35820
Os.52284.1.S1_at--447--8271Chr02:21517263..21517287 (25 bp)
GGCAGTGTGTCATACTGTATCTGGT
LOC_Os02g35820
Os.52284.1.S1_at--560--10251Chr02:21517291..21517315 (25 bp)
TTTGTGGCAGCCAGTGCTATGGTCT
LOC_Os02g35820
Os.52284.1.S1_at--760--3691Chr02:21517307..21517331 (25 bp)
CTATGGTCTGGGAAGGGCTCTCTGA
LOC_Os02g35820
Os.52284.1.S1_at--924--8311Chr02:21517322..21517346 (25 bp)
GGCTCTCTGACTCGGCAACTTTGGA
LOC_Os02g35820
Os.52284.1.S1_at--1100--4911Chr02:21517367..21517391 (25 bp)
GCTTGGCAATAGCTATGGGCTGTAA
LOC_Os02g35820
Os.52284.1.S1_at--727--9471Chr02:21517403..21517427 (25 bp)
TCTGTATAGCCTCAGACTGCCTTGA
LOC_Os02g35820
Os.52284.1.S1_at--553--3491Chr02:21517537..21517561 (25 bp)
CAGGCTTGTAATTTTGATGCTCACA
LOC_Os02g35820
Os.52284.1.S1_at--1122--1193Chr02:21517571..21517595 (25 bp)
AGTTTGCTTCTACTTTACAGGAGGG
LOC_Os02g35820
Os.52284.1.S1_at--641--8552Chr02:21517606..21517630 (25 bp)
TGGTTTTCAAATCCTCCTTGTAATA
LOC_Os02g35820
Target Sequence 
GATTAATATTCCTCTATGCCTACAGGATAAGAANCACTTGACTTNNCNTAAAGNACNCAGTATGGATGCCACCTCCAGAA
GATTGCGTAAAGATAAATGTGGATGCAGCAATATCACGATNGGGTAACAAGGGAGCTGTTGGGGCAGTGTGTCATACTGT
ATCTGGTGAATTTGTGGCAGCCAGTGCTATGGTCTGGGAAGGGCTCTCTGACTCGGCAACTTTGGAANCACTTGGATGCA
ATGAANGCTTGGCAATAGCTATGGGCTGTAATATGTCAGAGGTCTGTATAGCCTCAGACTGCCTTGAGGTCATTANGAGC
ATCTCAAAGAAACCAAGGTGCCAATATTTAGCANTCCTAAATGATATTGAGGCAAGAANGAAGCATTTTGCAAAAGTAGA
GTTTCGTCATGAAAATCAGGCTTGTAATTTTGATGCTCACAACTTANCTAAGTTTGCTTCTACTTTACAGGAGGGGNGTT
ATCTTTGGTTTTCAAATCCTCCTTGTAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52284.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis