Browse Element(s) Details


Os.52288.1.S1_at

Description gb:AK099619.1
DB_XREF= gi:32984828
TID=Os.52288.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.52288 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013052P13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013052P13, full insert sequence.
FL= gb:AK066101.1 gb:AK099619.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4276011/11IBR domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42720OsAffx.3493.1.S1_at11/113+23739610..23742050hypothetical protein
LOC_Os03g42730Os.46523.3.S1_x_at5/113+23743671..23745689hypothetical protein
LOC_Os03g42730Os.46523.1.S1_at4/113+23743671..23745689hypothetical protein
LOC_Os03g42740OsAffx.25499.1.S1_at11/113+23748704..23749653F-box family protein, putative
LOC_Os03g42750Os.17292.2.A1_s_at11/113+23751455..23762616roothairless 1, putative, expressed
LOC_Os03g42750Os.17292.1.S1_x_at10/113+23751455..23762616roothairless 1, putative, expressed
LOC_Os03g42760Os.52288.1.S1_at11/113+23766859..23770876IBR domain containing protein, expressed
LOC_Os03g42760Os.26818.2.S1_at1/113+23766859..23770876IBR domain containing protein, expressed
LOC_Os03g42770Os.53974.1.S1_at11/113+23771935..23778523U3 snoRNP-associated, putative, expressed
LOC_Os03g42780OsAffx.25501.1.S1_x_at11/113+23781927..23787061IBR domain containing protein, expressed
LOC_Os03g42780OsAffx.25501.1.S1_at11/113+23781927..23787061IBR domain containing protein, expressed
LOC_Os03g42780Os.7529.1.S1_at1/113+23781927..23787061IBR domain containing protein, expressed
LOC_Os03g42790Os.50106.1.S1_at11/113+23790357..23793881IBR domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52288.1.S1_at--276--1451Chr03:23770302..23770326 (25 bp)
AGAACCTCTTCGAGGACCGGCAGGA
LOC_Os03g42760
Os.52288.1.S1_at--872--1611Chr03:23770329..23770353 (25 bp)
AGCTGGAGCGCCACGTTGAGCATCT
LOC_Os03g42760
Os.52288.1.S1_at--118--2931Chr03:23770358..23770382 (25 bp)
AAGGAGCTCGCCACGGACTTGCTGG
LOC_Os03g42760
Os.52288.1.S1_at--1162--6391Chr03:23770438..23770462 (25 bp)
GATCGTCCAGGCAATCTGCGGGCAG
LOC_Os03g42760
Os.52288.1.S1_at--128--4671Chr03:23770455..23770479 (25 bp)
GCGGGCAGTTGTACAGGTGCATCCA
LOC_Os03g42760
Os.52288.1.S1_at--150--5611Chr03:23770580..23770604 (25 bp)
GACAAGGCTAGCTTCCAGTTTGGCA
LOC_Os03g42760
Os.52288.1.S1_at--139--1211Chr03:23770596..23770620 (25 bp)
AGTTTGGCAGCTGCCGCTAACCTCA
LOC_Os03g42760
Os.52288.1.S1_at--123--4851Chr03:23770611..23770635 (25 bp)
GCTAACCTCACTGTGCTTATCAGGT
LOC_Os03g42760
Os.52288.1.S1_at--81--191Chr03:23770711..23770735 (25 bp)
ATTTGACTTACTTACGCCTGAGCGA
LOC_Os03g42760
Os.52288.1.S1_at--644--4871Chr03:23770765..23770789 (25 bp)
GCTATACTTGCCTTATTTTTTGGTT
LOC_Os03g42760
Os.52288.1.S1_at--283--2711Chr03:23770824..23770848 (25 bp)
AAGCATTGACCATTCTTCTCATAAG
LOC_Os03g42760
Target Sequence 
AGAACCTCTTCGAGGACCGGCAGGAGCAGCTGGAGCGCCACGTTGAGCATCTCTCCAAGGAGCTCGCCACGGACTTGCTG
GGGCTGCCGGAGGAGGAGATCGTCCTGAAGAAGGTGGAGATTGCCAACCTCGCCAAGATCGTCCAGGCAATCTGCGGGCA
GTTGTACAGGTGCATCCAGGACGAACTCCTGCCACTGCTCGTCCAGCCCATGAACATTGCCGCGTACCAGCCGGACGGCC
CTGACAAGGCCAAGGAGTTCATCGGGGCTTGACATACAGACAAGGCTAGCTTCCAGTTTGGCAGCTGCCGCTAACCTCAC
TGTGCTTATCAGGTAAGTTATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTC
AGTATGTAGATTTGACTTACTTACGCCTGAGCGAAGGACGTAATGTTCATTCGAAATTAAAGTGCTATACTTGCCTTATT
TTTTGGTTGTTGGGGCGTATTTTGGTTTCAAAATAGTATTCTAAGCATTGACCATTCTTCTCATAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52288.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis