Browse Element(s) Details


Os.52319.1.S1_x_at

Description gb:AK066376.1
DB_XREF= gi:32976394
TID=Os.52319.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52319 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013063G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013063G10, full insert sequence.
FL= gb:AK066376.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3546011/11AT hook motif-containing protein, putative, expressed
LOC_Os01g627506/11expressed protein
LOC_Os01g439803/11AT hook motif-containing protein, putative
LOC_Os03g638703/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g35400OsAffx.7796.1.S1_at10/1112+21495264..21499408hypothetical protein
LOC_Os12g35410OsAffx.19975.1.S1_at11/1112+21499734..21505180AT hook motif-containing protein, putative
LOC_Os12g35410Os.27102.1.S1_x_at1/1112+21499734..21505180AT hook motif-containing protein, putative
LOC_Os12g35420OsAffx.7797.1.S1_at11/1112+21508424..21508750hypothetical protein
LOC_Os12g35430Os.53320.2.S1_s_at6/1112+21509799..21512827transposon protein, putative, Mutator sub-class
LOC_Os12g35430Os.53320.1.S1_at5/1112+21509799..21512827transposon protein, putative, Mutator sub-class
LOC_Os12g35430Os.53320.1.S1_s_at5/1112+21509799..21512827transposon protein, putative, Mutator sub-class
LOC_Os12g35430Os.53320.2.S1_x_at4/1112+21509799..21512827transposon protein, putative, Mutator sub-class
LOC_Os12g35440OsAffx.32035.1.S1_at11/1112+21515914..21516225hypothetical protein
LOC_Os12g35450NANA12+21521436..21521825hypothetical protein
LOC_Os12g35460Os.53119.1.S1_at11/1112+21523971..21534835AT hook motif-containing protein, putative, expressed
LOC_Os12g35460Os.52319.1.S1_x_at11/1112+21523971..21534835AT hook motif-containing protein, putative, expressed
LOC_Os12g35460Os.16539.1.S1_at1/1112+21523971..21534835AT hook motif-containing protein, putative, expressed
LOC_Os12g35470OsAffx.21743.1.S1_s_at11/1112+21538011..21539415expressed protein
LOC_Os12g35480Os.49115.1.S1_at11/1112+21540718..21543285expressed protein
LOC_Os12g35490OsAffx.7800.1.S1_at11/1112+21544805..21547341hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006260biological_processDNA replication
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52319.1.S1_x_at--1095--6132Chr12:21533217..21533241 (25 bp)
GAGGGTCGTGCTCCCATGAACAAAA
LOC_Os12g35460
Os.52319.1.S1_x_at--458--10452Chr12:21533293..21533317 (25 bp)
TTACTCCCTGCGGTGACAAGATTAC
LOC_Os12g35460
Os.52319.1.S1_x_at--264--1571Chr12:21533318..21533342 (25 bp)
AGCTATAATTGATGCCGTGTACCCG
LOC_Os12g35460
Os.52319.1.S1_x_at--717--1531Chr12:21533383..21533407 (25 bp)
AGCATGCAATTGTCTGTCCTGTCAA
LOC_Os12g35460
Os.52319.1.S1_x_at--964--954Chr12:21533464..21533488 (25 bp)
AGGACTATCTTAGCAGCGACACTAT
LOC_Os12g35460
Os.52319.1.S1_x_at--1029--5531Chr12:21533573..21533597 (25 bp)
GAAACATCGCATATCCCTCAAAATT
LOC_Os12g35460
Os.52319.1.S1_x_at--777--3173Chr12:21533594..21533618 (25 bp)
AATTGGTTCAGCTGTAGTCCTGCTT
LOC_Os12g35460
Os.52319.1.S1_x_at--1083--3072Chr12:21533632..21533656 (25 bp)
AATCACTCGGCCTTTGCAATGGGAT
LOC_Os12g35460
Os.52319.1.S1_x_at--447--9751Chr12:21533656..21533680 (25 bp)
TAAGATTGATGGTCACCCGACTCGG
LOC_Os12g35460
Os.52319.1.S1_x_at--1078--3114Chr12:21533718..21533742 (25 bp)
AATATTGGCCAGCTGGTCTGTATTC
LOC_Os12g35460
Os.52319.1.S1_x_at--843--7153Chr12:21533733..21533757 (25 bp)
GTCTGTATTCCACGGATTGTCCTAA
LOC_Os12g35460
Target Sequence 
GAGGGTCGTGCTCCCATGAACAAAAGACAAGGTGAGGTTGAGAGGACATGGATAGAGATACCTAAGGAGTTGCTGCTTAC
TCCCTGCGGTGACAAGATTACAGCTATAATTGATGCCGTGTACCCGGATTTTGAATTGAACTATGACTACATTCCTTACC
TTTCTCAGCATGCAATTGTCTGTCCTGTCAATACAGTTGTTGATGAGATTAATGATAAGATGCTTGCTAAAGTGCTTGGG
GATGCAAAGGACTATCTTAGCAGCGACACTATTTCAAATACACTTGAAAAGCCTGCAGATTTTGATCTATTGTACCCCAT
AGAATTTCTAAACTCAATATCCATAAACAATTTCCCGAAACATCGCATATCCCTCAAAATTGGTTCAGCTGTAGTCCTGC
TTCGCAACATTAACCAATCACTCGGCCTTTGCAATGGGATAAGATTGATGGTCACCCGACTCGGTGATTATGTTTTCGGG
TCCAAAATCATGACTGGCACAAATATTGGCCAGCTGGTCTGTATTCCACGGATTGTCCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52319.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis