Browse Element(s) Details


Os.52347.1.S1_at

Description gb:AK066559.1
DB_XREF= gi:32976577
TID=Os.52347.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52347 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013074H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013074H11, full insert sequence.
FL= gb:AK066559.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4593011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45908Os.51887.1.S1_x_at1/1111+27261195..27265085retrotransposon protein, putative, unclassified
LOC_Os11g45908OsAffx.8923.1.S1_at1/1111+27261195..27265085retrotransposon protein, putative, unclassified
LOC_Os11g45920Os.25268.1.A1_at10/1111+27272805..27285902retrotransposon protein, putative, unclassified
LOC_Os11g45920Os.51336.1.S1_at1/1111+27272805..27285902retrotransposon protein, putative, unclassified
LOC_Os11g45930Os.52347.1.S1_at11/1111+27286970..27291013NB-ARC domain containing protein, expressed
LOC_Os11g45940OsAffx.31502.1.S1_at11/1111+27292325..27293487hypothetical protein
LOC_Os11g45950OsAffx.7423.1.S1_at11/1111+27297369..27298159NAC-domain containing protein 90, putative, expressed
LOC_Os11g45960OsAffx.10621.1.S1_x_at1/1111+27300098..27300436hypothetical protein
LOC_Os11g45960OsAffx.10621.1.S1_at1/1111+27300098..27300436hypothetical protein
LOC_Os11g45970OsAffx.19399.1.S1_at11/1111+27305443..27311623NB-ARC domain containing protein, expressed
LOC_Os11g45970OsAffx.16187.1.S1_at1/1111+27305443..27311623NB-ARC domain containing protein, expressed
LOC_Os11g45970OsAffx.29322.1.S1_x_at1/1111+27305443..27311623NB-ARC domain containing protein, expressed
LOC_Os11g45980OsAffx.31503.1.S1_at7/1111+27313501..27317699NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52347.1.S1_at--298--6971Chr11:27290414..27290438 (25 bp)
GTAGCCCAGCCAACAGGTTCAGATG
LOC_Os11g45930
Os.52347.1.S1_at--850--6251Chr11:27290435..27290459 (25 bp)
GATGGTGGACTGGATTCTAGCCTTA
LOC_Os11g45930
Os.52347.1.S1_at--854--7391Chr11:27290501..27290525 (25 bp)
GTGATCGTTCATCCGGTGGTAGTAA
LOC_Os11g45930
Os.52347.1.S1_at--217--111Chr11:27290550..27290574 (25 bp)
ATTCGTTTGCGAATCTCTAGCACAT
LOC_Os11g45930
Os.52347.1.S1_at--72--1491Chr11:27290632..27290656 (25 bp)
AGCAATCTTTATTTCTGTTCAGTAC
LOC_Os11g45930
Os.52347.1.S1_at--1125--8691Chr11:27290688..27290712 (25 bp)
TGTCTTTCCCTACTTGTTGTGTACT
LOC_Os11g45930
Os.52347.1.S1_at--343--6631Chr11:27290703..27290727 (25 bp)
GTTGTGTACTTCCTACAGTTACTGT
LOC_Os11g45930
Os.52347.1.S1_at--749--7511Chr11:27290742..27290766 (25 bp)
GTGGAACTTTACGTGCCTAGAGCTT
LOC_Os11g45930
Os.52347.1.S1_at--300--5231Chr11:27290840..27290864 (25 bp)
GAATTTGTCCAAAAGTCGCCGAAGG
LOC_Os11g45930
Os.52347.1.S1_at--808--6871Chr11:27290867..27290891 (25 bp)
GTATGTTCAGGCCTCAGGGTCTAAA
LOC_Os11g45930
Os.52347.1.S1_at--980--1951Chr11:27290961..27290985 (25 bp)
ACTGTACTTTGATCCAGCCCTAAAG
LOC_Os11g45930
Target Sequence 
GTAGCCCAGCCAACAGGTTCAGATGGTGGACTGGATTCTAGCCTTAAGAAGATGAGACTTTCAGAGCCTTCTTCTTCTCG
GCTTCAGGTGATCGTTCATCCGGTGGTAGTAACAGCCACTGAGGCAGCACCCCAGCATTCGTTTGCGAATCTCTAGCACA
TATATTCAACTGCAGCAGACTGCAATAAAATACAATTCAAAATTTGCAAGAAAAGCTTAGCAATCTTTATTTCTGTTCAG
TACATCTGTTAGACAGTTACATGGTCCAGATTTCTGTCTTTCCCTACTTGTTGTGTACTTCCTACAGTTACTGTTTAGCT
ACATTAGTGTGGAACTTTACGTGCCTAGAGCTTTGAAAATGCTTTGTTTTCGTTGAAATGAGTTGTTGTCTGTAAGTCTA
TTGGAAAGAAGTGAATGCCAGGAAGTGAATTTGTCCAAAAGTCGCCGAAGGCTGTATGTTCAGGCCTCAGGGTCTAAATT
GACCTTGTTTTGTGTAAGTTTAGGGTGTTCAATAATGTAACTTTAGGGGATAATTTGGGGATTTTTCACTGTACTTTGAT
CCAGCCCTAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52347.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis