Browse Element(s) Details


Os.25268.1.A1_at

Description gb:CA760141
DB_XREF= gi:25804180
DB_XREF=BR060008B20C11.ab1
CLONE=BR060008B20C11.ab1
TID=Os.25268.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.25268 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_194112.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4592010/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45880Os.10827.1.S1_x_at1/1111+27245765..27248923transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g45890Os.53981.1.S1_at11/1111+27253080..27254824expressed protein
LOC_Os11g45899NANA11+27258123..27260710hypothetical protein
LOC_Os11g45908Os.51887.1.S1_x_at1/1111+27261195..27265085retrotransposon protein, putative, unclassified
LOC_Os11g45908OsAffx.8923.1.S1_at1/1111+27261195..27265085retrotransposon protein, putative, unclassified
LOC_Os11g45920Os.25268.1.A1_at10/1111+27272805..27285902retrotransposon protein, putative, unclassified
LOC_Os11g45920Os.51336.1.S1_at1/1111+27272805..27285902retrotransposon protein, putative, unclassified
LOC_Os11g45930Os.52347.1.S1_at11/1111+27286970..27291013NB-ARC domain containing protein, expressed
LOC_Os11g45940OsAffx.31502.1.S1_at11/1111+27292325..27293487hypothetical protein
LOC_Os11g45950OsAffx.7423.1.S1_at11/1111+27297369..27298159NAC-domain containing protein 90, putative, expressed
LOC_Os11g45960OsAffx.10621.1.S1_x_at1/1111+27300098..27300436hypothetical protein
LOC_Os11g45960OsAffx.10621.1.S1_at1/1111+27300098..27300436hypothetical protein
LOC_Os11g45970OsAffx.19399.1.S1_at11/1111+27305443..27311623NB-ARC domain containing protein, expressed
LOC_Os11g45970OsAffx.16187.1.S1_at1/1111+27305443..27311623NB-ARC domain containing protein, expressed
LOC_Os11g45970OsAffx.29322.1.S1_x_at1/1111+27305443..27311623NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25268.1.A1_at--458--2291Chr11:27278441..27278465 (25 bp)
AAAGGCAAGTGAGGGTGACCTCCGT
LOC_Os11g45920
Os.25268.1.A1_at--498--7151Chr11:27278371..27278394 (24 bp)
GTCCTCGGCTTCAGTTACCTAAGGG
LOC_Os11g45920
Os.25268.1.A1_at--524--2131Chr11:27278205..27278229 (25 bp)
ACAGGTGTGCCACCAAGGGCTGCCA
LOC_Os11g45920
Os.25268.1.A1_at--273--4791Chr11:27278187..27278211 (25 bp)
GCTGCCAGGCGTCCAAGCAAGTGCA
LOC_Os11g45920
Os.25268.1.A1_at--601--9571NONE
TCTTCGACGCCACATACTTGGGTGA
NONE
Os.25268.1.A1_at--535--2071Chr11:27278127..27278249 (25 bp)
ACTTGGGTGAGCACACCTGCGCTGA
LOC_Os11g45920
Os.25268.1.A1_at--704--4111Chr11:27278088..27278112 (25 bp)
CGCACTCCAGCGACCAAGTACAGGT
LOC_Os11g45920
Os.25268.1.A1_at--898--1171Chr11:27278072..27278096 (25 bp)
AGTACAGGTCACATTATGGCCGCCT
LOC_Os11g45920
Os.25268.1.A1_at--709--3031Chr11:27278016..27278040 (25 bp)
AATCCGGGCTCGAGCAGAGCTCCAC
LOC_Os11g45920
Os.25268.1.A1_at--618--9211Chr11:27277996..27278020 (25 bp)
TCCACTGTCACTGTTACTGCATCAA
LOC_Os11g45920
Os.25268.1.A1_at--1123--8352Chr11:27277834..27277858 (25 bp)
GGCGTGCGTTGTAATTGAATCAAAA
LOC_Os11g45920
Target Sequence 
AAAGGCAAGTGAGGGTGACCTCCGTGCCGGCGGATGACGGCTACAGCTGGAGGAAGTACGGGCGGAAGAACGTCCTCGGC
TTCAGTTACCTAAGGGGTTACTACAGGTGTGCCACCAAGGGCTGCCAGGCGTCCAAGCAAGTGCAGCGCCACGACGACGG
CTTGCTCTTCGACGCCACATACTTGGGTGAGCACACCTGCGCTGATCAGCCTCAGGCAGCGCACTCCAGCGACCAAGTAC
AGGTCACATTATGGCCGCCTGCCGTAAGCCCAGAGCAACCGCTCACACCGCAATCCGGGCTCGAGCAGAGCTCCACTGTC
ACTGTTACTGCATCAATACAGAGCACTACCCATAACTCTAGTATCATTGGGCCTAGAAGATCCAAACGAGAAGTCCACAC
CAACCCAAAGTATATGGGCTGTGATTGGGTTACTGGTTGAGGAAGTCTATAAATACTAGAAGGATCTTCTAGAGGCGTGC
GTTGTAATTGAATCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25268.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis