Browse Element(s) Details


OsAffx.31502.1.S1_at

Description tigr:9639.m04281
TID=OsAffx.31502.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4594011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45920Os.25268.1.A1_at10/1111+27272805..27285902retrotransposon protein, putative, unclassified
LOC_Os11g45920Os.51336.1.S1_at1/1111+27272805..27285902retrotransposon protein, putative, unclassified
LOC_Os11g45930Os.52347.1.S1_at11/1111+27286970..27291013NB-ARC domain containing protein, expressed
LOC_Os11g45940OsAffx.31502.1.S1_at11/1111+27292325..27293487hypothetical protein
LOC_Os11g45950OsAffx.7423.1.S1_at11/1111+27297369..27298159NAC-domain containing protein 90, putative, expressed
LOC_Os11g45960OsAffx.10621.1.S1_x_at1/1111+27300098..27300436hypothetical protein
LOC_Os11g45960OsAffx.10621.1.S1_at1/1111+27300098..27300436hypothetical protein
LOC_Os11g45970OsAffx.19399.1.S1_at11/1111+27305443..27311623NB-ARC domain containing protein, expressed
LOC_Os11g45970OsAffx.16187.1.S1_at1/1111+27305443..27311623NB-ARC domain containing protein, expressed
LOC_Os11g45970OsAffx.29322.1.S1_x_at1/1111+27305443..27311623NB-ARC domain containing protein, expressed
LOC_Os11g45980OsAffx.31503.1.S1_at7/1111+27313501..27317699NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31502.1.S1_at--201--8651Chr11:27292408..27292432 (25 bp)
TGGGCAGCGCTTCGAGGTGGTGCTA
LOC_Os11g45940
OsAffx.31502.1.S1_at--351--4631Chr11:27292568..27292592 (25 bp)
GCGATGGCGGCGAGTAGCATGCAGT
LOC_Os11g45940
OsAffx.31502.1.S1_at--655--2311Chr11:27292686..27292710 (25 bp)
AAAGGTGTATCGGAGCTTGCCTTCG
LOC_Os11g45940
OsAffx.31502.1.S1_at--374--8771Chr11:27292691..27292715 (25 bp)
TGTATCGGAGCTTGCCTTCGCCTTC
LOC_Os11g45940
OsAffx.31502.1.S1_at--582--4511Chr11:27292722..27292746 (25 bp)
GCCGCAGAGTGGACCATGCAGTGCT
LOC_Os11g45940
OsAffx.31502.1.S1_at--950--1091Chr11:27292729..27292753 (25 bp)
AGTGGACCATGCAGTGCTTCGATCA
LOC_Os11g45940
OsAffx.31502.1.S1_at--891--1111Chr11:27292741..27292765 (25 bp)
AGTGCTTCGATCACCAACGACGGGT
LOC_Os11g45940
OsAffx.31502.1.S1_at--887--9371Chr11:27292747..27292771 (25 bp)
TCGATCACCAACGACGGGTGCAAGT
LOC_Os11g45940
OsAffx.31502.1.S1_at--1018--9011Chr11:27292765..27292789 (25 bp)
TGCAAGTGTTCCTCCGTGGCAGGTT
LOC_Os11g45940
OsAffx.31502.1.S1_at--967--8591Chr11:27292798..27292822 (25 bp)
TGGTCGCCGTGGCATCGTACGCTTC
LOC_Os11g45940
OsAffx.31502.1.S1_at--468--3511Chr11:27292881..27292905 (25 bp)
CATGTTGCCGCACCGGTGTTCGCCG
LOC_Os11g45940
Target Sequence 
TGGGCAGCGCTTCGAGGTGGTGCTAGCGCGGATAGAGGTGGAAGATGAGGCGGCGGCAACGGGCAGCAGGGCGGACGGCA
GCCGGAGTGGTGGCGGCGAGCGGGAGGGTGGGCGACGCTTCGGGGTGGTGCTGGCGCGGATAGAGGCGGAAGAGGTGGCA
GCGATGGCGGCGAGTAGCATGCAGTGGCAAGGGAGATGGCTGCGGCGGCGGAGATGGGTGGGCGAGGTCGCTGGAGCGTC
AGTGGCAGCGGAGAGGATGGGGCGGCGACCAAGCTGCAAAAGGTGTATCGGAGCTTGCCTTCGCCTTCCCGCCCGCCGCA
GAGTGGACCATGCAGTGCTTCGATCACCAACGACGGGTGCAAGTGTTCCTCCGTGGCAGGTTCCCCGCCTTGGTCGCCGT
GGCATCGTACGCTTCCCTGGCCGCCGTCTCCATCGTTGTTGTGCCGCTCCTGTACCCGCAGCTCTAGCACCGCCATGTTG
CCGCACCGGTGTTCGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31502.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis