Browse Element(s) Details


Os.52367.1.S1_at

Description gb:AK066681.1
DB_XREF= gi:32976699
TID=Os.52367.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52367 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013068H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013068H12, full insert sequence.
FL= gb:AK066681.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4121011/11disease resistance protein RPM1 homolog, putative, expressed
LOC_Os12g146991/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g41180OsAffx.31479.5.S1_x_at8/1111+24184562..24188660hypothetical protein
LOC_Os11g41190OsAffx.31479.1.S1_x_at11/1111+24190392..24196478AT hook motif-containing protein, putative
LOC_Os11g41190OsAffx.31479.4.S1_x_at8/1111+24190392..24196478AT hook motif-containing protein, putative
LOC_Os11g41200OsAffx.31422.1.S1_at10/1111+24196627..24197944hypothetical protein
LOC_Os11g41210Os.52367.1.S1_at11/1111+24211307..24218550disease resistance protein RPM1 homolog, putative, expressed
LOC_Os11g41210OsAffx.7371.1.S1_at11/1111+24211307..24218550disease resistance protein RPM1 homolog, putative, expressed
LOC_Os11g41210OsAffx.7039.1.S1_at1/1111+24211307..24218550disease resistance protein RPM1 homolog, putative, expressed
LOC_Os11g41230OsAffx.31423.1.S1_at11/1111+24223130..24223696MATH domain containing protein
LOC_Os11g41240OsAffx.31423.1.S1_at11/1111+24225954..24226508MATH domain containing protein
LOC_Os11g41240OsAffx.31423.2.S1_at4/1111+24225954..24226508MATH domain containing protein
LOC_Os11g41250OsAffx.31423.2.S1_at11/1111+24228912..24229355expressed protein
LOC_Os11g41260OsAffx.31424.1.S1_x_at11/1111+24232890..24236016BTB/POZ domain containing protein
LOC_Os11g41260OsAffx.31424.1.S1_at11/1111+24232890..24236016BTB/POZ domain containing protein
LOC_Os11g41260Os.24000.1.S1_at4/1111+24232890..24236016BTB/POZ domain containing protein
LOC_Os11g41270OsAffx.29307.1.S1_at1/1111+24236344..24240012hypothetical protein
LOC_Os11g41270OsAffx.16528.1.S1_at1/1111+24236344..24240012hypothetical protein
LOC_Os11g41280OsAffx.20387.1.S1_x_at1/1111+24241906..24247931retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006952biological_processdefense response
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52367.1.S1_at--124--5951Chr11:24218040..24218064 (25 bp)
GAGCACAAAATAACCCCTGCTATTT
LOC_Os11g41210
Os.52367.1.S1_at--774--9751Chr11:24218120..24218144 (25 bp)
TAATCAATGGCTTCCCAGAGGCTCA
LOC_Os11g41210
Os.52367.1.S1_at--286--9291Chr11:24218132..24218156 (25 bp)
TCCCAGAGGCTCATCGAATCATATG
LOC_Os11g41210
Os.52367.1.S1_at--738--6991Chr11:24218173..24218197 (25 bp)
GTACGTATACTTCTGGTTCCTTGGT
LOC_Os11g41210
Os.52367.1.S1_at--1025--1991Chr11:24218282..24218306 (25 bp)
ACTACCAAATTCGAGGGCTAGCCTG
LOC_Os11g41210
Os.52367.1.S1_at--900--4831Chr11:24218298..24218322 (25 bp)
GCTAGCCTGTATGCCGAAAACCATC
LOC_Os11g41210
Os.52367.1.S1_at--925--10331Chr11:24218335..24218359 (25 bp)
TTTACCTTCTATGGGTGGACCGTCA
LOC_Os11g41210
Os.52367.1.S1_at--516--8511Chr11:24218350..24218374 (25 bp)
TGGACCGTCAGGTTTTACCGTCTAG
LOC_Os11g41210
Os.52367.1.S1_at--160--9092Chr11:24218418..24218442 (25 bp)
TGCTGCCTTGGCTTTTAATTTGTTT
LOC_Os11g41210
Os.52367.1.S1_at--4--451Chr11:24218493..24218517 (25 bp)
ATCTTTGTGTAAAAGTCTCCCGCCG
LOC_Os11g41210
Os.52367.1.S1_at--598--7171Chr11:24218507..24218531 (25 bp)
GTCTCCCGCCGTTTGATATGATATA
LOC_Os11g41210
Target Sequence 
GAGCACAAAATAACCCCTGCTATTTAGTTCATCATCTGCAATTTCATCTATTCAAGGTATATAACTATAGTACTTGATAA
TAATCAATGGCTTCCCAGAGGCTCATCGAATCATATGTTATCTTATTAACTAGGTACGTATACTTCTGGTTCCTTGGTAG
AAGCAAATATTTTGTTCCTTTAATTGATTTGTGATGTATCAATGGGCCGGCTGGTTCCTTGGGTGGCCACTAGCCCACTG
TCACTACCAAATTCGAGGGCTAGCCTGTATGCCGAAAACCATCAGGAAAATAGATTTTACCTTCTATGGGTGGACCGTCA
GGTTTTACCGTCTAGTAGTGTACAGTACTGGGGGATACAAACTTGATGTTTCATTGTGTGCTGCCTTGGCTTTTAATTTG
TTTGTTCTGTAACTGAGCAATAGTTGGAGCTTGAAAATGTGCCCATGTTTGGTATCTTTGTGTAAAAGTCTCCCGCCGTT
TGATATGATATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52367.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis