Browse Element(s) Details


Os.52374.1.S1_a_at

Description gb:AK066715.1
DB_XREF= gi:32976733
TID=Os.52374.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52374 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023113B13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013088A05, full insert sequence.
FL= gb:AK066715.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2989011/11phosphatidylinositol 3- and 4-kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29840Os.21292.1.S1_at11/119+18149617..18154454Hsp90 protein, expressed
LOC_Os09g29850OsAffx.30088.2.S1_at10/119+18155178..18157500expressed protein
LOC_Os09g29860NANA9+18158819..18159112hypothetical protein
LOC_Os09g29870OsAffx.6445.1.S1_at11/119+18162203..18163292hypothetical protein
LOC_Os09g29880OsAffx.30089.1.S1_at10/119+18166830..18169831hypothetical protein
LOC_Os09g29880Os.38764.1.S1_x_at2/119+18166830..18169831hypothetical protein
LOC_Os09g29880Os.48015.1.A1_x_at2/119+18166830..18169831hypothetical protein
LOC_Os09g29880Os.23189.1.S1_at1/119+18166830..18169831hypothetical protein
LOC_Os09g29890Os.52374.1.S1_a_at11/119+18173554..18177934phosphatidylinositol 3- and 4-kinase family protein, putative, expressed
LOC_Os09g29900OsAffx.28000.1.S1_at11/119+18179315..18180100hypothetical protein
LOC_Os09g29910OsAffx.30091.1.S1_x_at11/119+18184100..18184582hypothetical protein
LOC_Os09g29920OsAffx.848.1.S1_at5/119+18187917..18193978retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004428molecular_functioninositol or phosphatidylinositol kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52374.1.S1_a_at--102--1031Chr09:18174126..18174150 (25 bp)
AGGTAGTGAGCATCAGTCTGGTAGC
LOC_Os09g29890
Os.52374.1.S1_a_at--791--10011Chr09:18174105..18174129 (25 bp)
TAGCAGGAGTGCCAATGAGCTTCTC
LOC_Os09g29890
Os.52374.1.S1_a_at--1076--4531Chr09:18174073..18174097 (25 bp)
GCGCCAGTTTTGTGAAGCTGTCCGA
LOC_Os09g29890
Os.52374.1.S1_a_at--974--1611Chr09:18174058..18174082 (25 bp)
AGCTGTCCGACATGGGCTCTGATGA
LOC_Os09g29890
Os.52374.1.S1_a_at--103--711Chr09:18174037..18174061 (25 bp)
ATGAGTGGAGCGCATTCCTCGACAA
LOC_Os09g29890
Os.52374.1.S1_a_at--869--8871Chr09:18173961..18173985 (25 bp)
TGATGGCCCTCGTCCGTTGCAGAGG
LOC_Os09g29890
Os.52374.1.S1_a_at--715--5391Chr09:18173898..18173922 (25 bp)
GAAGCAGCAGCTTTATACCAAGGTA
LOC_Os09g29890
Os.52374.1.S1_a_at--118--1511Chr09:18173844..18173868 (25 bp)
AGCAGCAGCTTTGTCCGTCGAAGGC
LOC_Os09g29890
Os.52374.1.S1_a_at--573--10811Chr09:18173834..18173858 (25 bp)
TTGTCCGTCGAAGGCAGCTAGCAGA
LOC_Os09g29890
Os.52374.1.S1_a_at--876--7671Chr09:18173673..18173697 (25 bp)
GGGTTGTTCTTTCATCTGTACATAT
LOC_Os09g29890
Os.52374.1.S1_a_at--291--1091Chr09:18173599..18173623 (25 bp)
AGTGTGCTGGCCTTGCCGGTGTACC
LOC_Os09g29890
Target Sequence 
AGGTAGTGAGCATCAGTCTGGTAGCAGGAGTGCCAATGAGCTTCTCCCTCCCAGCGCCAGTTTTGTGAAGCTGTCCGACA
TGGGCTCTGATGAGTGGAGCGCATTCCTCGACAAGTTCCAGGAGCTGCTCCCGAGCGCCTTCCGAGCCCGGAAGCACGCC
GCTGCTGATGGCCCTCGTCCGTTGCAGAGGCTGGGCACTTCTTGCCAGTTTTGAAACTAGAAGAAGAAGAAGCAGCAGCT
TTATACCAAGGTAATGTAGATGGAACCCATCAGGTGTTCAGCAGCAGCAGCTTTGTCCGTCGAAGGCAGCTAGCAGAAGC
TCTGTACGCTTGTAGGTGTCTGTTCTCGGAGAAGATATAGAGGTGGTTCGGGAATAAGACCGTCCGTCCTTGACAAATAT
GAGCTTGCAGGAGGGTTTGTGTCGTGTTTGTGAATAGCTTTGACATATGTGTTGGGTTGTTCTTTCATCTGTACATATAT
GAAATGAATGAGTACCTCTCGATACCGGGCTTGACCTGGTAGTGGTGAGTGTGCTGGCCTTGCCGGTGTACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52374.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis