Browse Element(s) Details


Os.52377.1.S1_s_at

Description gb:AK066722.1
DB_XREF= gi:32976740
TID=Os.52377.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52377 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013087K21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013087K21, full insert sequence.
FL= gb:AK066722.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1337011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13330OsAffx.2595.1.S1_at11/112+7111106..7111729Bet v I allergen family protein, putative
LOC_Os02g13340Os.24143.1.A1_at10/112+7115786..7119630pentatricopeptide, putative, expressed
LOC_Os02g13350OsAffx.12016.1.S1_at11/112+7123770..7126123hydrolase, NUDIX family protein, expressed
LOC_Os02g13360OsAffx.12017.1.S1_at11/112+7126765..7131311expressed protein
LOC_Os02g13370Os.52377.1.S1_s_at11/112+7132009..7133382expressed protein
LOC_Os02g13370Os.52377.1.S1_at7/112+7132009..7133382expressed protein
LOC_Os02g13380Os.4170.1.S1_at8/112+7135189..7138046Early nodulin 93, putative, expressed
LOC_Os02g13390NANA2+7141810..7143857hypothetical protein
LOC_Os02g13400Os.7296.1.S1_at11/112+7144563..7150536Poly polymerase central domain containing protein, expressed
LOC_Os02g13410OsAffx.2597.1.S1_at11/112+7154364..7157124Protein kinase domain containing protein, expressed
LOC_Os02g13410Os.46572.2.S1_x_at1/112+7154364..7157124Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52377.1.S1_s_at--74--3671Chr02:7133126..7133150 (25 bp)
CTTACCGTCCTGGTGATTATCTTGA
LOC_Os02g13370
Os.52377.1.S1_s_at--189--8831Chr02:7133113..7133137 (25 bp)
TGATTATCTTGAGCCGTCATCGTCG
LOC_Os02g13370
Os.52377.1.S1_s_at--761--7111Chr02:7133086..7133110 (25 bp)
GTCATCAGCATCTTCGAGCACATTG
LOC_Os02g13370
Os.52377.1.S1_s_at--304--10631Chr02:7133074..7133098 (25 bp)
TTCGAGCACATTGCAGCTGGATTCT
LOC_Os02g13370
Os.52377.1.S1_s_at--115--4731Chr02:7133059..7133083 (25 bp)
GCTGGATTCTGAAGGGCCGCTCTGT
LOC_Os02g13370
Os.52377.1.S1_s_at--623--9471Chr02:7133039..7133063 (25 bp)
TCTGTGACTTGTCCTCACTGATAGC
LOC_Os02g13370
Os.52377.1.S1_s_at--414--1971Chr02:7133023..7133047 (25 bp)
ACTGATAGCCCAGCTTCCTATCAGG
LOC_Os02g13370
Os.52377.1.S1_s_at--425--1331Chr02:7132456..7132480 (25 bp)
AGAGGGCTGTCCAACTATTACCAAG
LOC_Os02g13370
Os.52377.1.S1_s_at--82--7971Chr02:7132249..7132273 (25 bp)
GGATCATTTACCTGTCTGCTGTCAA
LOC_Os02g13370
Os.52377.1.S1_s_at--436--1051Chr02:7132095..7132119 (25 bp)
AGGGTTTCAGGTATCCAGTTTCAGC
LOC_Os02g13370
Os.52377.1.S1_s_at--1154--9811Chr02:7132070..7132094 (25 bp)
TAACATGTTGTGCTGCGCTTGTACT
LOC_Os02g13370
Target Sequence 
CTTACCGTCCTGGTGATTATCTTGAGCCGTCATCGTCGTCGTCATCAGCATCTTCGAGCACATTGCAGCTGGATTCTGAA
GGGCCGCTCTGTGACTTGTCCTCACTGATAGCCCAGCTTCCTATCAGGAGAGGGCTGTCCAACTATTACCAAGGAAAATC
CCAATCATTCACATCGATATCTGATGCTACANGTGTTCAGGACCTTGCAAAGAAAATTACCTACAATAAGAGGATGAAGG
CGTGCAAAAGCTATGCAGCAGGACTAGACATGAATCAACGATCAAATCACTTGCCAAAGCCATGCAACAAGATGATAGCG
AAGAGGCCCTCGAAAGGATCATTTACCTGTCTGCTGTCAAGACCAAGCAGCACCAGCCTCCTGTGCAGCAGTGCTAAACC
ACCTACACACCAGAGCAAGAAAGATGTACAAATGCATATTAACTCGTAACAAAAAATATGACCCTGGAAAGTGGAAACAA
ACAAGTACTAGGGTTTCAGGTATCCAGTTTCAGCTAACATGTTGTGCTGCGCTTGTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52377.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis