Browse Element(s) Details


Os.52395.1.S1_at

Description gb:AK066836.1
DB_XREF= gi:32976854
TID=Os.52395.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52395 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013088I01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013088I01, full insert sequence.
FL= gb:AK066836.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2574011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25650OsAffx.17894.1.S1_at11/119+15407553..15414547GEX2, putative, expressed
LOC_Os09g25660NANA9+15415087..15416486transposon protein, putative, Pong sub-class
LOC_Os09g25670NANA9+15417299..15418558transposon protein, putative, Pong sub-class
LOC_Os09g25679NANA9+15418768..15419206NA
LOC_Os09g25690OsAffx.6397.1.S1_at11/119+15419769..15420566hypothetical protein
LOC_Os09g25700OsAffx.6398.1.S1_at11/119+15421387..15423389hypothetical protein
LOC_Os09g25710OsAffx.6399.1.S1_at11/119+15425337..15425864expressed protein
LOC_Os09g25720OsAffx.17895.1.S1_s_at11/119+15429675..15430148expressed protein
LOC_Os09g25720OsAffx.17895.1.S1_at11/119+15429675..15430148expressed protein
LOC_Os09g25730NANA9+15430738..15432537transposon protein, putative, unclassified
LOC_Os09g25740OsAffx.30020.1.A1_at11/119+15437140..15439298expressed protein
LOC_Os09g25740Os.52395.1.S1_x_at11/119+15437140..15439298expressed protein
LOC_Os09g25740Os.52395.1.S1_at11/119+15437140..15439298expressed protein
LOC_Os09g25760Os.6961.1.S1_a_at11/119+15443235..15445530senescence-associated protein DH, putative, expressed
LOC_Os09g25770Os.49485.1.S1_at10/119+15446684..15448981Integral membrane protein DUF6 containing protein, expressed
LOC_Os09g25784Os.54575.1.S1_at11/119+15449530..15455011Integral membrane protein DUF6 containing protein, expressed
LOC_Os09g25784Os.52700.1.S1_at11/119+15449530..15455011Integral membrane protein DUF6 containing protein, expressed
LOC_Os09g25800OsAffx.30021.1.S1_at11/119+15456698..15458212nodulin MtN21 family protein, putative
LOC_Os09g25810Os.12092.1.S1_at10/119+15463769..15467832Integral membrane protein DUF6 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52395.1.S1_at--1032--8851Chr09:15439023..15439047 (25 bp)
TGATGACGTGTCATCCTAACATGTG
LOC_Os09g25740
Os.52395.1.S1_at--372--2411Chr09:15439091..15439115 (25 bp)
AAAACCGGCGTCAATACTGCCCTAG
LOC_Os09g25740
Os.52395.1.S1_at--215--1774Chr09:15439094..15439118 (25 bp)
ACCGGCGTCAATACTGCCCTAGGAC
LOC_Os09g25740
Os.52395.1.S1_at--149--10051Chr09:15439139..15439163 (25 bp)
TAGTTAAGGGATCTTATATATCTGG
LOC_Os09g25740
Os.52395.1.S1_at--277--9731Chr09:15439173..15439197 (25 bp)
TCAAGTACGTATTTTTATCTGGCTC
LOC_Os09g25740
Os.52395.1.S1_at--176--1191Chr09:15439176..15439200 (25 bp)
AGTACGTATTTTTATCTGGCTCACA
LOC_Os09g25740
Os.52395.1.S1_at--1095--6871Chr09:15439181..15439205 (25 bp)
GTATTTTTATCTGGCTCACAAGTTG
LOC_Os09g25740
Os.52395.1.S1_at--285--8275Chr09:15439193..15439217 (25 bp)
GGCTCACAAGTTGAGGGTCCTTCGG
LOC_Os09g25740
Os.52395.1.S1_at--641--7011Chr09:15439219..15439243 (25 bp)
GTACTTTTTCTAACACTGGAATTGG
LOC_Os09g25740
Os.52395.1.S1_at--586--2471Chr09:15439230..15439254 (25 bp)
AACACTGGAATTGGATGCTACGAAC
LOC_Os09g25740
Os.52395.1.S1_at--304--8511Chr09:15439235..15439259 (25 bp)
TGGAATTGGATGCTACGAACAGCTG
LOC_Os09g25740
Target Sequence 
TGATGACGTGTCATCCTAACATGTGGGACCCACGTGGGTCCCATGCTGACTCAGCCGTCACGTGAGACAAAACCGGCGTC
AATACTGCCCTAGGACCTCGGGTGACCGGTTTTGTATAGTTAAGGGATCTTATATATCTGGTTTTACGGTTCAAGTACGT
ATTTTTATCTGGCTCACAAGTTGAGGGTCCTTCGGTGTACTTTTTCTAACACTGGAATTGGATGCTACGAACAGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52395.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis