Browse Element(s) Details


Os.52395.1.S1_x_at

Description gb:AK066836.1
DB_XREF= gi:32976854
TID=Os.52395.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52395 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013088I01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013088I01, full insert sequence.
FL= gb:AK066836.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2574011/11expressed protein
LOC_Os10g364201/11YABBY protein
LOC_Os02g261901/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g362501/11expressed protein
LOC_Os01g511701/11Glycylpeptide N-tetradecanoyltransferase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25650OsAffx.17894.1.S1_at11/119+15407553..15414547GEX2, putative, expressed
LOC_Os09g25660NANA9+15415087..15416486transposon protein, putative, Pong sub-class
LOC_Os09g25670NANA9+15417299..15418558transposon protein, putative, Pong sub-class
LOC_Os09g25679NANA9+15418768..15419206NA
LOC_Os09g25690OsAffx.6397.1.S1_at11/119+15419769..15420566hypothetical protein
LOC_Os09g25700OsAffx.6398.1.S1_at11/119+15421387..15423389hypothetical protein
LOC_Os09g25710OsAffx.6399.1.S1_at11/119+15425337..15425864expressed protein
LOC_Os09g25720OsAffx.17895.1.S1_s_at11/119+15429675..15430148expressed protein
LOC_Os09g25720OsAffx.17895.1.S1_at11/119+15429675..15430148expressed protein
LOC_Os09g25730NANA9+15430738..15432537transposon protein, putative, unclassified
LOC_Os09g25740OsAffx.30020.1.A1_at11/119+15437140..15439298expressed protein
LOC_Os09g25740Os.52395.1.S1_x_at11/119+15437140..15439298expressed protein
LOC_Os09g25740Os.52395.1.S1_at11/119+15437140..15439298expressed protein
LOC_Os09g25760Os.6961.1.S1_a_at11/119+15443235..15445530senescence-associated protein DH, putative, expressed
LOC_Os09g25770Os.49485.1.S1_at10/119+15446684..15448981Integral membrane protein DUF6 containing protein, expressed
LOC_Os09g25784Os.54575.1.S1_at11/119+15449530..15455011Integral membrane protein DUF6 containing protein, expressed
LOC_Os09g25784Os.52700.1.S1_at11/119+15449530..15455011Integral membrane protein DUF6 containing protein, expressed
LOC_Os09g25800OsAffx.30021.1.S1_at11/119+15456698..15458212nodulin MtN21 family protein, putative
LOC_Os09g25810Os.12092.1.S1_at10/119+15463769..15467832Integral membrane protein DUF6 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0006812biological_processcation transport
GO:0009909biological_processregulation of flower development
GO:0009933biological_processmeristem organization
GO:0009944biological_processpolarity specification of adaxial/abaxial axis
GO:0010154biological_processfruit development
GO:0010158biological_processabaxial cell fate specification
GO:0040007biological_processgrowth
GO:0045165biological_processcell fate commitment
GO:0045449biological_processregulation of transcription
GO:0048481biological_processovule development
GO:0005634cellular_componentnucleus
GO:0005840cellular_componentribosome
GO:0003700molecular_functiontranscription factor activity
GO:0005451molecular_functionmonovalent cation:proton antiporter activity
GO:0015385molecular_functionsodium:hydrogen antiporter activity
GO:0019107molecular_functionmyristoyltransferase activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52395.1.S1_x_at--1017--3312Chr09:15438574..15438695 (25 bp)
CACTCCCTCCTGGATGAGATATCGA
LOC_Os09g25740
Os.52395.1.S1_x_at--455--9411Chr09:15438921..15438945 (25 bp)
TCGTCCGCATGGCAGTGATCAACTT
LOC_Os09g25740
Os.52395.1.S1_x_at--406--3232Chr09:15438958..15438982 (25 bp)
CAAGAAGCTCCGATCCAAGCGAGAA
LOC_Os09g25740
Os.52395.1.S1_x_at--1033--8851Chr09:15439023..15439047 (25 bp)
TGATGACGTGTCATCCTAACATGTG
LOC_Os09g25740
Os.52395.1.S1_x_at--371--2411Chr09:15439091..15439115 (25 bp)
AAAACCGGCGTCAATACTGCCCTAG
LOC_Os09g25740
Os.52395.1.S1_x_at--82--3092Chr09:15439103..15439127 (25 bp)
AATACTGCCCTAGGACCTCGGGTGA
LOC_Os09g25740
Os.52395.1.S1_x_at--824--2333Chr11:14474727..14474779 (24 bp)
ATATATCTGGTTTTACGGTTCAAGT
NONE
Os.52395.1.S1_x_at--175--1191Chr09:15439176..15439200 (25 bp)
AGTACGTATTTTTATCTGGCTCACA
LOC_Os09g25740
Os.52395.1.S1_x_at--759--3891Chr09:15439191..15439215 (25 bp)
CTGGCTCACAAGTTGAGGGTCCTTC
LOC_Os09g25740
Os.52395.1.S1_x_at--640--7011Chr09:15439219..15439243 (25 bp)
GTACTTTTTCTAACACTGGAATTGG
LOC_Os09g25740
Os.52395.1.S1_x_at--585--2471Chr09:15439230..15439254 (25 bp)
AACACTGGAATTGGATGCTACGAAC
LOC_Os09g25740
Target Sequence 
CACTCCCTCCTGGATGAGATATCGACGGCGAGCTCCCCGACCCAGCTGCTGGCGGCCTGATGGCGAGCGCTGCAAGCTGC
AGGAACAACGTCTGCAGAAACAATAAGAAGATGATCGCCTTCCTCCGCTGGGCGCTCCACCCCCCCTTCCTTCTTCCGCG
CCTGGCACATCGGCGTCCGCGCCAGGGAGTCCAAGAAGCGGGTCGCCTTCATCTTCGGTGTCCCCGCGAGCATCCGCGCA
CGCGACGACGTCGTCCGCATGGCAGTGATCAACTTCCTCTGCGTCCACAAGAAGCTCCGATCCAAGCGAGAAGAGAGGAG
AGAGGAAGGGAGAGAAGAAGGAAAAAGAGAGATGATGACGTGTCATCCTAACATGTGGGACCCACGTGGGTCCCATGCTG
ACTCAGCCGTCACGTGAGACAAAACCGGCGTCAATACTGCCCTAGGACCTCGGGTGACCGGTTTTGTATAGTTAAGGGAT
CTTATATATCTGGTTTTACGGTTCAAGTACGTATTTTTATCTGGCTCACAAGTTGAGGGTCCTTCGGTGTACTTTTTCTA
ACACTGGAATTGGATGCTACGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52395.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis