Browse Element(s) Details


Os.52402.1.S1_at

Description gb:AK066884.1
DB_XREF= gi:32976902
TID=Os.52402.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52402 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-121-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013088D19, full insert sequence.
FL= gb:AK066884.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4476011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44710NANA8+27962765..27966070retrotransposon protein, putative, unclassified
LOC_Os08g44720NANA8+27968634..27971367retrotransposon protein, putative, unclassified
LOC_Os08g44730OsAffx.17514.1.S1_at11/118+27978031..27978466hypothetical protein
LOC_Os08g44740OsAffx.17515.1.S1_at11/118+27979966..27980923hypothetical protein
LOC_Os08g44750Os.5091.1.S1_at11/118+27985889..27988746nodulin MtN21 family protein, putative, expressed
LOC_Os08g44760Os.52402.1.S1_at11/118+27990463..27993793expressed protein
LOC_Os08g44760Os.52402.2.S1_at11/118+27990463..27993793expressed protein
LOC_Os08g44770Os.5522.1.S1_at10/118+27999601..28002662Superoxide dismutase, chloroplast precursor, putative, expressed
LOC_Os08g44780Os.50081.1.S1_x_at11/118+28002729..28004421expressed protein
LOC_Os08g44790Os.53024.1.S1_at11/118+28004706..28005867Alpha-expansin 3 precursor, putative, expressed
LOC_Os08g44800OsAffx.6139.1.S1_at11/118+28006054..28007512hypothetical protein
LOC_Os08g44810Os.11588.1.S1_at11/118+28008211..28012039Malate dehydrogenase 1, chloroplast precursor, putative, expressed
LOC_Os08g44820Os.9354.2.S1_at11/118+28012033..28016394No apical meristem protein, expressed
LOC_Os08g44820Os.9354.1.S1_at11/118+28012033..28016394No apical meristem protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52402.1.S1_at--1160--6091Chr08:27991079..27991103 (25 bp)
GAGTCTGTAGAGTATCGGATTCCAA
LOC_Os08g44760
Os.52402.1.S1_at--794--8151Chr08:27990966..27990990 (25 bp)
GGAACAATATTGTCTCCCAACTCGG
LOC_Os08g44760
Os.52402.1.S1_at--218--10811Chr08:27990957..27990981 (25 bp)
TTGTCTCCCAACTCGGATGTGAGGA
LOC_Os08g44760
Os.52402.1.S1_at--383--7431Chr08:27990913..27990937 (25 bp)
GTGTAGTACTAGATCCTCACCACTT
LOC_Os08g44760
Os.52402.1.S1_at--880--7831Chr08:27990843..27990867 (25 bp)
GGTAAACTATCTTCTTCAAGGGTGG
LOC_Os08g44760
Os.52402.1.S1_at--898--9051Chr08:27990684..27990708 (25 bp)
TGCTTCTGGAGCTCGGGTTATAATC
LOC_Os08g44760
Os.52402.1.S1_at--939--6791Chr08:27990668..27990692 (25 bp)
GTTATAATCCAATCTTCACCCTTGT
LOC_Os08g44760
Os.52402.1.S1_at--79--5891Chr08:27990573..27990597 (25 bp)
GAGCTGGCTCATTGTAATTTGGTGT
LOC_Os08g44760
Os.52402.1.S1_at--959--7731Chr08:27990553..27990577 (25 bp)
GGTGTGTGTCTCAATAGTTCTGGGA
LOC_Os08g44760
Os.52402.1.S1_at--648--6711Chr08:27990537..27990561 (25 bp)
GTTCTGGGAGTAGCTTCAAAGTGCA
LOC_Os08g44760
Os.52402.1.S1_at--997--351Chr08:27990476..27990500 (25 bp)
ATCAATTTATTACACCTTCACGAAG
LOC_Os08g44760
Target Sequence 
GAGTCTGTAGAGTATCGGATTCCAACAGGGACATGGAAAGTATGGCTGAATCAGGCAGCTTCAGATGTCTGCCACAGACA
ATCAAAATGATATCATGTAAGCAATCTAGAAGTGGAACAATATTGTCTCCCAACTCGGATGTGAGGAACAGCTGTAGTCG
ACAAGAGTGTAGTACTAGATCCTCACCACTTGGTTCATCAAAAAGTGCAAGCAATAGGATGACTGATTTATCACTTGGTA
AACTATCTTCTTCAAGGGTGGAATCATTCCATGAGGAAAAGGAGAAGGTGATCAAGATAGAAGAAAGCTTGCTTCTGGAG
CTCGGGTTATAATCCAATCTTCACCCTTGTGTGAAGTGAGTGATGACAGCACTGAATCACTGTAAGGGGCTGTGATTTTG
TTTTCCTTTTGTTTTTCTGTGAGCTGGCTCATTGTAATTTGGTGTGTGTCTCAATAGTTCTGGGAGTAGCTTCAAAGTGC
AATTTTATTCATTTTATGACATGTGTGATATTCAGCAATCAATTTATTACACCTTCACGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52402.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis