Browse Element(s) Details


Os.52411.1.S1_at

Description gb:AK066948.1
DB_XREF= gi:32976966
TID=Os.52411.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52411 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013089A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013089A07, full insert sequence.
FL= gb:AK066948.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0264011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02570OsAffx.3115.1.S1_x_at5/113+928618..930947Dihydrodipicolinate reductase, N-terminus family protein
LOC_Os03g02580Os.4871.1.S1_at2/113+934216..935823Armadillo/beta-catenin-like repeat family protein
LOC_Os03g02590Os.6448.1.S1_at11/113+936381..938446Peroxisomal membrane protein PEX11-1, putative, expressed
LOC_Os03g02600Os.52984.1.S1_at10/113+938790..940869riboflavin biosynthesis protein RibD containing protein, expressed
LOC_Os03g02610Os.16862.1.S1_at11/113+942525..943662Glycosyl hydrolases family 16 protein, expressed
LOC_Os03g02610Os.16862.1.S1_s_at11/113+942525..943662Glycosyl hydrolases family 16 protein, expressed
LOC_Os03g02620NANA3+944590..944937hypothetical protein
LOC_Os03g02630Os.40360.1.S1_at6/113+946568..949140hypothetical protein
LOC_Os03g02630Os.40360.1.S1_x_at4/113+946568..949140hypothetical protein
LOC_Os03g02630Os.40855.5.S1_x_at3/113+946568..949140hypothetical protein
LOC_Os03g02640Os.52411.1.S1_at11/113+952949..956757expressed protein
LOC_Os03g02650Os.55877.1.S1_at11/113+957161..958115AP2 domain containing protein, expressed
LOC_Os03g02660Os.53330.1.S1_at11/113+964116..968105expressed protein
LOC_Os03g02660OsAffx.12144.2.A1_s_at11/113+964116..968105expressed protein
LOC_Os03g02660OsAffx.26471.1.A1_at1/113+964116..968105expressed protein
LOC_Os03g02670Os.27602.1.S1_at11/113+969463..973054UDP-galactose transporter, putative, expressed
LOC_Os03g02670Os.7088.1.S1_at1/113+969463..973054UDP-galactose transporter, putative, expressed
LOC_Os03g02680Os.11723.1.S1_s_at11/113+975945..979582Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g02680Os.11723.2.S1_s_at11/113+975945..979582Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g02680Os.11723.3.S1_at11/113+975945..979582Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g02680Os.11723.4.S1_x_at10/113+975945..979582Cell division control protein 2 homolog 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52411.1.S1_at--297--651Chr03:955020..955044 (25 bp)
ATGCATCCACTTTTTGAAGGCGCTG
LOC_Os03g02640
Os.52411.1.S1_at--559--5291Chr03:955035..955059 (25 bp)
GAAGGCGCTGTTATGGAGCCATGCT
LOC_Os03g02640
Os.52411.1.S1_at--857--5411Chr03:955110..955134 (25 bp)
GAACCTGTTATATTGGACCCAGCTT
LOC_Os03g02640
Os.52411.1.S1_at--362--1551Chr03:955130..955492 (25 bp)
AGCTTGCTACTATGGCCACAACGAA
LOC_Os03g02640
Os.52411.1.S1_at--108--8591Chr03:955501..955525 (25 bp)
TGGTATGTCATGGTGCGCTGGATTT
LOC_Os03g02640
Os.52411.1.S1_at--937--7751Chr03:956373..956397 (25 bp)
GGTGATGCCGAAACAGCCAGGCTTT
LOC_Os03g02640
Os.52411.1.S1_at--415--991Chr03:956404..956428 (25 bp)
AGGAGGGACCTGTATCTTCTGTACC
LOC_Os03g02640
Os.52411.1.S1_at--25--10611Chr03:956420..956444 (25 bp)
TTCTGTACCACTATCTGAACCACTA
LOC_Os03g02640
Os.52411.1.S1_at--28--3331Chr03:956440..956464 (25 bp)
CACTACAATCTTTTTGGCTCCGGGT
LOC_Os03g02640
Os.52411.1.S1_at--331--4831Chr03:956468..956492 (25 bp)
GCTCATCAGCTATGTCCATTATCGA
LOC_Os03g02640
Os.52411.1.S1_at--508--8991Chr03:956510..956534 (25 bp)
TGAAGGCTTAGCTTCTTCCGTTTCC
LOC_Os03g02640
Target Sequence 
ATGCATCCACTTTTTGAAGGCGCTGTTATGGAGCCATGCTTGCTTCATGGGGATCTATGGAGTGGAAACATAAGTTCTGA
TACTAATGGTGAACCTGTTATATTGGACCCAGCTTGCTACTATGGCCACAACGAAGCGGAGTTTGGTATGTCATGGTGCG
CTGGATTTGGGGGGGAATTCTATAGCTCCTATTTTGAGGTGATGCCGAAACAGCCAGGCTTTGAGAAGAGGAGGGACCTG
TATCTTCTGTACCACTATCTGAACCACTACAATCTTTTTGGCTCCGGGTACCGCTCATCAGCTATGTCCATTATCGATGA
CTACTTGAGGATGCTGAAGGCTTAGCTTCTTCCGTTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52411.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis