Browse Element(s) Details


Os.55877.1.S1_at

Description gb:AK108930.1
DB_XREF= gi:32994139
TID=Os.55877.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55877 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-153-A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-153-A05, full insert sequence.
FL= gb:AK108930.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0265011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02580Os.4871.1.S1_at2/113+934216..935823Armadillo/beta-catenin-like repeat family protein
LOC_Os03g02590Os.6448.1.S1_at11/113+936381..938446Peroxisomal membrane protein PEX11-1, putative, expressed
LOC_Os03g02600Os.52984.1.S1_at10/113+938790..940869riboflavin biosynthesis protein RibD containing protein, expressed
LOC_Os03g02610Os.16862.1.S1_at11/113+942525..943662Glycosyl hydrolases family 16 protein, expressed
LOC_Os03g02610Os.16862.1.S1_s_at11/113+942525..943662Glycosyl hydrolases family 16 protein, expressed
LOC_Os03g02620NANA3+944590..944937hypothetical protein
LOC_Os03g02630Os.40360.1.S1_at6/113+946568..949140hypothetical protein
LOC_Os03g02630Os.40360.1.S1_x_at4/113+946568..949140hypothetical protein
LOC_Os03g02630Os.40855.5.S1_x_at3/113+946568..949140hypothetical protein
LOC_Os03g02640Os.52411.1.S1_at11/113+952949..956757expressed protein
LOC_Os03g02650Os.55877.1.S1_at11/113+957161..958115AP2 domain containing protein, expressed
LOC_Os03g02660Os.53330.1.S1_at11/113+964116..968105expressed protein
LOC_Os03g02660OsAffx.12144.2.A1_s_at11/113+964116..968105expressed protein
LOC_Os03g02660OsAffx.26471.1.A1_at1/113+964116..968105expressed protein
LOC_Os03g02670Os.27602.1.S1_at11/113+969463..973054UDP-galactose transporter, putative, expressed
LOC_Os03g02670Os.7088.1.S1_at1/113+969463..973054UDP-galactose transporter, putative, expressed
LOC_Os03g02680Os.11723.1.S1_s_at11/113+975945..979582Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g02680Os.11723.2.S1_s_at11/113+975945..979582Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g02680Os.11723.3.S1_at11/113+975945..979582Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g02680Os.11723.4.S1_x_at10/113+975945..979582Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g02690OsAffx.3115.1.S1_x_at11/113+982673..985614Dihydrodipicolinate reductase, C-terminus family protein, expressed
LOC_Os03g02690Os.49168.1.S1_s_at11/113+982673..985614Dihydrodipicolinate reductase, C-terminus family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009409biological_processresponse to cold
GO:0009414biological_processresponse to water deprivation
GO:0009651biological_processresponse to salt stress
GO:0009686biological_processgibberellic acid biosynthesis
GO:0016049biological_processcell growth
GO:0048510biological_processregulation of timing of transition from vegetative to reproductive phase
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55877.1.S1_at--267--5751Chr03:957850..957874 (25 bp)
GACGGCATGAGCCTGTGGAACCATT
LOC_Os03g02650
Os.55877.1.S1_at--1092--791Chr03:957881..957905 (25 bp)
ATGGGCTTACGGGTGCATAGCATTT
LOC_Os03g02650
Os.55877.1.S1_at--853--8011Chr03:957909..957933 (25 bp)
GGAGGACACCATGTATTTTCCATGT
LOC_Os03g02650
Os.55877.1.S1_at--438--7411Chr03:957932..957956 (25 bp)
GTGTTCGTATGAATTCTGTGCCTAC
LOC_Os03g02650
Os.55877.1.S1_at--593--3151Chr03:957943..957967 (25 bp)
AATTCTGTGCCTACGTACAGTACGT
LOC_Os03g02650
Os.55877.1.S1_at--795--6971Chr03:957962..957986 (25 bp)
GTACGTACTCGGCACGTATGCGAGA
LOC_Os03g02650
Os.55877.1.S1_at--1142--3831Chr03:958010..958034 (25 bp)
CTGAATTTTATCGTAGTTGTCCTGT
LOC_Os03g02650
Os.55877.1.S1_at--257--1251Chr03:958024..958048 (25 bp)
AGTTGTCCTGTTACGTGTATACGGT
LOC_Os03g02650
Os.55877.1.S1_at--352--10171Chr03:958041..958065 (25 bp)
TATACGGTATATATGGTCACTCCAC
LOC_Os03g02650
Os.55877.1.S1_at--299--7831Chr03:958055..958079 (25 bp)
GGTCACTCCACTGATGTATAAGCCA
LOC_Os03g02650
Os.55877.1.S1_at--209--8771Chr03:958069..958093 (25 bp)
TGTATAAGCCATCCGTAGACGAATT
LOC_Os03g02650
Target Sequence 
GACGGCATGAGCCTGTGGAACCATTCCTGAAATGGGCTTACGGGTGCATAGCATTTGCAGGAGGACACCATGTATTTTCC
ATGTGTTCGTATGAATTCTGTGCCTACGTACAGTACGTACTCGGCACGTATGCGAGATAGGAACAGAGCAGAGCAGGATA
CTGAATTTTATCGTAGTTGTCCTGTTACGTGTATACGGTATATATGGTCACTCCACTGATGTATAAGCCATCCGTAGACG
AATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55877.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis