Browse Element(s) Details

Os.49168.1.S1_s_at

Description

gb:AK065477.1
DB_XREF= gi:32975495
TID=Os.49168.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49168 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013023L22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013023L22, full insert sequence.
FL= gb:AK065477.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g02690	11/11	Dihydrodipicolinate reductase, C-terminus family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g02650	Os.55877.1.S1_at	11/11	3	+	957161..958115	AP2 domain containing protein, expressed
LOC_Os03g02660	Os.53330.1.S1_at	11/11	3	+	964116..968105	expressed protein
LOC_Os03g02660	OsAffx.12144.2.A1_s_at	11/11	3	+	964116..968105	expressed protein
LOC_Os03g02660	OsAffx.26471.1.A1_at	1/11	3	+	964116..968105	expressed protein
LOC_Os03g02670	Os.27602.1.S1_at	11/11	3	+	969463..973054	UDP-galactose transporter, putative, expressed
LOC_Os03g02670	Os.7088.1.S1_at	1/11	3	+	969463..973054	UDP-galactose transporter, putative, expressed
LOC_Os03g02680	Os.11723.1.S1_s_at	11/11	3	+	975945..979582	Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g02680	Os.11723.2.S1_s_at	11/11	3	+	975945..979582	Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g02680	Os.11723.3.S1_at	11/11	3	+	975945..979582	Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g02680	Os.11723.4.S1_x_at	10/11	3	+	975945..979582	Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g02690	OsAffx.3115.1.S1_x_at	11/11	3	+	982673..985614	Dihydrodipicolinate reductase, C-terminus family protein, expressed
LOC_Os03g02690	Os.49168.1.S1_s_at	11/11	3	+	982673..985614	Dihydrodipicolinate reductase, C-terminus family protein, expressed
LOC_Os03g02700	OsAffx.12714.1.S1_x_at	11/11	3	+	986728..988856	GMC oxidoreductase family protein
LOC_Os03g02700	OsAffx.12714.1.S1_at	11/11	3	+	986728..988856	GMC oxidoreductase family protein
LOC_Os03g02710	Os.20342.1.S1_at	11/11	3	+	993651..998551	Hydroxymethylglutaryl-CoA synthase, putative, expressed
LOC_Os03g02720	Os.24783.1.A1_at	11/11	3	+	999803..1002876	expressed protein
LOC_Os03g02730	Os.32472.1.S1_at	10/11	3	+	1003077..1005106	ABR017Cp, putative, expressed
LOC_Os03g02740	Os.34954.1.S1_at	11/11	3	+	1005935..1009991	Phospholipase D beta 1, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0009089	biological_process	lysine biosynthesis via diaminopimelate
GO:0008839	molecular_function	dihydrodipicolinate reductase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.49168.1.S1_s_at--157--473	1	Chr03:985110..985134 (25 bp)	GCTGGTAGGAATTTTCATCCCACAT	LOC_Os03g02690
Os.49168.1.S1_s_at--678--127	1	Chr03:985285..985309 (25 bp)	AGATACACAATCTTGCTGCAAGTTC	LOC_Os03g02690
Os.49168.1.S1_s_at--1130--909	1	Chr03:985298..985322 (25 bp)	TGCTGCAAGTTCAAGGTGGAAACCA	LOC_Os03g02690
Os.49168.1.S1_s_at--202--247	1	Chr03:985323..985347 (25 bp)	AACACATGTCAGCAATATTCGGGAA	LOC_Os03g02690
Os.49168.1.S1_s_at--29--1023	1	Chr03:985338..985362 (25 bp)	TATTCGGGAAAGCAACCATGGTGAT	LOC_Os03g02690
Os.49168.1.S1_s_at--753--359	1	Chr03:985366..985390 (25 bp)	CATTGTCACCAAAATTGAGCCAATT	LOC_Os03g02690
Os.49168.1.S1_s_at--322--751	1	Chr03:985400..985424 (25 bp)	GTGGTTGAATTGACTCAAGGCCTCA	LOC_Os03g02690
Os.49168.1.S1_s_at--867--295	1	Chr03:985416..985440 (25 bp)	AAGGCCTCAAGCATATGAGTTCCAT	LOC_Os03g02690
Os.49168.1.S1_s_at--435--287	1	Chr03:985451..985475 (25 bp)	AAGGGAACTCTAGCTGTAAGGAACT	LOC_Os03g02690
Os.49168.1.S1_s_at--254--65	1	Chr03:985518..985542 (25 bp)	ATGCATGGTGCGTTGATAGGGAACT	LOC_Os03g02690
Os.49168.1.S1_s_at--1100--65	1	Chr03:985559..985583 (25 bp)	ATGAAGTGATGTCCCCTTGTTTGTA	LOC_Os03g02690

Target Sequence

GCTGGTAGGAATTTTCATCCCACATATCAAGAGAAATACAAGCTATGGATATTCATGATGTTACCCAAGATACACAATCT
TGCTGCAAGTTCAAGGTGGAAACCAAACACATGTCAGCAATATTCGGGAAAGCAACCATGGTGATAACCATTGTCACCAA
AATTGAGCCAATTAATAAATGAGTGGTTGAATTGACTCAAGGCCTCAAGCATATGAGTTCCATCACAGAACATAAGGGAA
CTCTAGCTGTAAGGAACTANGTTTGGTCCTGGGTGATGCTGACGCAAAATGTTTATAACAATGCATGGTGCGTTGATAGG
GAACTNTTTTNANNCCCTTGAGATGAAGTGATGTCCCCTTGTTTGTA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis