Browse Element(s) Details


Os.24783.1.A1_at

Description gb:AK073382.1
DB_XREF= gi:32983405
TID=Os.24783.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24783 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Unknown protein (OJ1263H11.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033030H10, full insert sequence.
FL= gb:AK073382.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0272011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02680Os.11723.1.S1_s_at11/113+975945..979582Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g02680Os.11723.2.S1_s_at11/113+975945..979582Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g02680Os.11723.3.S1_at11/113+975945..979582Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g02680Os.11723.4.S1_x_at10/113+975945..979582Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g02690OsAffx.3115.1.S1_x_at11/113+982673..985614Dihydrodipicolinate reductase, C-terminus family protein, expressed
LOC_Os03g02690Os.49168.1.S1_s_at11/113+982673..985614Dihydrodipicolinate reductase, C-terminus family protein, expressed
LOC_Os03g02700OsAffx.12714.1.S1_x_at11/113+986728..988856GMC oxidoreductase family protein
LOC_Os03g02700OsAffx.12714.1.S1_at11/113+986728..988856GMC oxidoreductase family protein
LOC_Os03g02710Os.20342.1.S1_at11/113+993651..998551Hydroxymethylglutaryl-CoA synthase, putative, expressed
LOC_Os03g02720Os.24783.1.A1_at11/113+999803..1002876expressed protein
LOC_Os03g02730Os.32472.1.S1_at10/113+1003077..1005106ABR017Cp, putative, expressed
LOC_Os03g02740Os.34954.1.S1_at11/113+1005935..1009991Phospholipase D beta 1, putative, expressed
LOC_Os03g02750Os.9533.1.S1_at11/113+1012328..1015016Subtilisin N-terminal Region family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24783.1.A1_at--1104--6251Chr03:1001964..1001988 (25 bp)
GATGGGATTATTTTACTCTTGCAGC
LOC_Os03g02720
Os.24783.1.A1_at--564--2011Chr03:1001978..1002002 (25 bp)
ACTCTTGCAGCAGTGTGTTGTTGAT
LOC_Os03g02720
Os.24783.1.A1_at--503--3811Chr03:1002118..1002142 (25 bp)
CTCCAGAGATTGCTGACATAGGTCT
LOC_Os03g02720
Os.24783.1.A1_at--1064--6471Chr03:1002569..1002590 (22 bp)
GATACTTTCCATTTTGATCCTTCAT
LOC_Os03g02720
Os.24783.1.A1_at--851--6011Chr03:1002612..1002636 (25 bp)
GAGATCAGACTCACGTACCGACGTT
LOC_Os03g02720
Os.24783.1.A1_at--590--4211Chr03:1002629..1002653 (25 bp)
CCGACGTTCCTCTCATTAACGGAAG
LOC_Os03g02720
Os.24783.1.A1_at--405--1491Chr03:1002652..1002676 (25 bp)
AGCAAACTAATATTGCCGCTGCCTT
LOC_Os03g02720
Os.24783.1.A1_at--958--4231Chr03:1002756..1002780 (25 bp)
CCGGGATTCAGATACTTTCTTGGAG
LOC_Os03g02720
Os.24783.1.A1_at--421--7391Chr03:1002828..1002851 (24 bp)
GTGAGATGTTTCTAGATCCACTCTT
LOC_Os03g02720
Os.24783.1.A1_at--111--1291Chr03:1002840..1002864 (25 bp)
AGATCCACTCTTATCATAGGCGTCC
LOC_Os03g02720
Os.24783.1.A1_at--847--10131Chr03:1002851..1002875 (25 bp)
TATCATAGGCGTCCGTTTTTTAATC
LOC_Os03g02720
Target Sequence 
GATGGGATTATTTTACTCTTGCAGCAGTGTGTTGTTGATGAAGAAAACCCATACTTGAGGGAGTGGGGTCTTTTTGCTGT
GAAGAACTTGCTTGAAGGAAATGAGGAAAACCAGAAGGAGGTATCTGGACTTAAGATGCAAGAAGCTGTTATAACTCCAG
AGATTGCTGACATAGGTCTAAGAGTGGAGATAGACAAGGAAACAGGACATCCGAAACTGGTTAATAACTGATGATACTTT
CCATTTTGATCCTTCATGTTTGAGGTGAAAAGAAAAGGGAGATCAGACTCACGTACCGACGTTCCTCTCATTAACGGAAG
CAAACTAATATTGCCGCTGCCTTNTGCACCCCCGGGAAGATAGGTGTTGCTTTTTTTCATTAATGTTAGTCATGTTAATA
TTGATGGCGAGCATTTGAACCNCCGGGATTCAGATACTTTCTTGGAGAAATGAATGCNAATGGTTTTTTNCGTTGCATCA
AAACAGTGATGTGGTGAGATGTTTCTAGATCCACTCTTATCATAGGCGTCCGTTTTTTAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24783.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis