Browse Element(s) Details


OsAffx.3115.1.S1_x_at

Description tigr:9631.m00178
TID=OsAffx.3115.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Dihydrodipicolinate reductase, C-terminus, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0269011/11Dihydrodipicolinate reductase, C-terminus family protein, expressed
LOC_Os03g025705/11Dihydrodipicolinate reductase, N-terminus family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02650Os.55877.1.S1_at11/113+957161..958115AP2 domain containing protein, expressed
LOC_Os03g02660Os.53330.1.S1_at11/113+964116..968105expressed protein
LOC_Os03g02660OsAffx.12144.2.A1_s_at11/113+964116..968105expressed protein
LOC_Os03g02660OsAffx.26471.1.A1_at1/113+964116..968105expressed protein
LOC_Os03g02670Os.27602.1.S1_at11/113+969463..973054UDP-galactose transporter, putative, expressed
LOC_Os03g02670Os.7088.1.S1_at1/113+969463..973054UDP-galactose transporter, putative, expressed
LOC_Os03g02680Os.11723.1.S1_s_at11/113+975945..979582Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g02680Os.11723.2.S1_s_at11/113+975945..979582Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g02680Os.11723.3.S1_at11/113+975945..979582Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g02680Os.11723.4.S1_x_at10/113+975945..979582Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g02690OsAffx.3115.1.S1_x_at11/113+982673..985614Dihydrodipicolinate reductase, C-terminus family protein, expressed
LOC_Os03g02690Os.49168.1.S1_s_at11/113+982673..985614Dihydrodipicolinate reductase, C-terminus family protein, expressed
LOC_Os03g02700OsAffx.12714.1.S1_x_at11/113+986728..988856GMC oxidoreductase family protein
LOC_Os03g02700OsAffx.12714.1.S1_at11/113+986728..988856GMC oxidoreductase family protein
LOC_Os03g02710Os.20342.1.S1_at11/113+993651..998551Hydroxymethylglutaryl-CoA synthase, putative, expressed
LOC_Os03g02720Os.24783.1.A1_at11/113+999803..1002876expressed protein
LOC_Os03g02730Os.32472.1.S1_at10/113+1003077..1005106ABR017Cp, putative, expressed
LOC_Os03g02740Os.34954.1.S1_at11/113+1005935..1009991Phospholipase D beta 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009089biological_processlysine biosynthesis via diaminopimelate
GO:0008839molecular_functiondihydrodipicolinate reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3115.1.S1_x_at--507--3492Chr03:983879..983903 (25 bp)
CAGGCAGCGGCATTTGGTTTAAACA
LOC_Os03g02690
OsAffx.3115.1.S1_x_at--537--3852Chr03:983943..983967 (25 bp)
CTGAGCTGTCAGCATTCTGCGAGAA
LOC_Os03g02690
OsAffx.3115.1.S1_x_at--264--1531Chr03:983953..984104 (25 bp)
AGCATGGGTTGCTTGGTCACACCAA
LOC_Os03g02690
OsAffx.3115.1.S1_x_at--1135--10411Chr03:984107..984131 (25 bp)
TTATCAATTGGCTCAGTGCTCCTAC
LOC_Os03g02690
OsAffx.3115.1.S1_x_at--589--6691Chr03:984154..984178 (25 bp)
GTTCCACTACAACAACGTCGAGATA
LOC_Os03g02690
OsAffx.3115.1.S1_x_at--268--8212Chr03:984181..984203 (23 bp)
GGAATCAAGACCTAACCCATCGGAT
LOC_Os03g02690
OsAffx.3115.1.S1_x_at--84--9811Chr03:984193..984453 (25 bp)
TAACCCATCGGATTTGCCATCGCAA
LOC_Os03g02690
OsAffx.3115.1.S1_x_at--232--7312Chr03:984744..984768 (25 bp)
GTGCGTGTCCACAGTATGGTTCTAC
LOC_Os03g02690
OsAffx.3115.1.S1_x_at--939--10691Chr03:984775..984799 (25 bp)
TTGCTTCCAGTACATCGATCCATTT
LOC_Os03g02690
OsAffx.3115.1.S1_x_at--1108--7552Chr03:984803..984912 (25 bp)
GGGCCCTGGAGAGATTTACACCTTA
LOC_Os03g02690
OsAffx.3115.1.S1_x_at--220--8791Chr03:984930..984954 (25 bp)
TGTTCAATGCCTAATGCCAGGATTA
LOC_Os03g02690
Target Sequence 
CAGGCAGCGGCATTTGGTTTAAACAGTGTGGTGTACGTTCCAAAAATTGAGTTAGATACAGTAACTGAGCTGTCAGCATT
CTGCGAGAAGGCAAGCATGGGTTGCTTGGTCACACCAACATTATCAATTGGCTCAGTGCTCCTACAGCAAGCTGCTATCC
AGGCCTCGTTCCACTACAACAACGTCGAGATAGTGGAATCAAGACCTAACCCATCGGATTTGCCATCGCAAGATGCAATA
CAGATTGCAAATAATATAACAGATCTTGGTCAGATATACAACAGGGAAGATATGGACTCCGATAATCCAGCAAGGGGTCA
GATACTTGGAGAAGATGGGGTGCGTGTCCACAGTATGGTTCTACCAGGCCTTGCTTCCAGTACATCGATCCATTTCTCGG
GCCCTGGAGAGATTTACACCTTAAGACATGATGTGACAAATGTTCAATGCCTAATGCCAGGATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3115.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis