Browse Element(s) Details


Os.34954.1.S1_at

Description gb:AK069519.1
DB_XREF= gi:32979543
TID=Os.34954.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34954 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative phospholipase D beta 2 (OJ1263H11.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023024E17, full insert sequence.
FL= gb:AK069519.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0274011/11Phospholipase D beta 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02690OsAffx.3115.1.S1_x_at11/113+982673..985614Dihydrodipicolinate reductase, C-terminus family protein, expressed
LOC_Os03g02690Os.49168.1.S1_s_at11/113+982673..985614Dihydrodipicolinate reductase, C-terminus family protein, expressed
LOC_Os03g02700OsAffx.12714.1.S1_x_at11/113+986728..988856GMC oxidoreductase family protein
LOC_Os03g02700OsAffx.12714.1.S1_at11/113+986728..988856GMC oxidoreductase family protein
LOC_Os03g02710Os.20342.1.S1_at11/113+993651..998551Hydroxymethylglutaryl-CoA synthase, putative, expressed
LOC_Os03g02720Os.24783.1.A1_at11/113+999803..1002876expressed protein
LOC_Os03g02730Os.32472.1.S1_at10/113+1003077..1005106ABR017Cp, putative, expressed
LOC_Os03g02740Os.34954.1.S1_at11/113+1005935..1009991Phospholipase D beta 1, putative, expressed
LOC_Os03g02750Os.9533.1.S1_at11/113+1012328..1015016Subtilisin N-terminal Region family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009395biological_processphospholipid catabolism
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0004630molecular_functionphospholipase D activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34954.1.S1_at--785--3911Chr03:1006554..1006578 (25 bp)
CGGCTAACATTAACCAGAGATCCAT
LOC_Os03g02740
Os.34954.1.S1_at--768--5291Chr03:1006528..1006552 (25 bp)
GAAGGAACCAGAGACACCGAGATCG
LOC_Os03g02740
Os.34954.1.S1_at--1125--791Chr03:1006475..1006499 (25 bp)
ATGGGCAAACATGCTTTCTGCTCCT
LOC_Os03g02740
Os.34954.1.S1_at--727--9091Chr03:1006380..1006481 (25 bp)
TGCTCCTCGTGGACAGATCTACGGG
LOC_Os03g02740
Os.34954.1.S1_at--749--7991Chr03:1006351..1006375 (25 bp)
GGATGTCACTGTGGGCAGAGCACAT
LOC_Os03g02740
Os.34954.1.S1_at--243--2351Chr03:1006312..1006336 (25 bp)
AAAGCTTCAGTTGCCCAGAGAGCCT
LOC_Os03g02740
Os.34954.1.S1_at--439--9031Chr03:1006283..1006307 (25 bp)
TGCACGAGGCAGGTTCGGCACATCG
LOC_Os03g02740
Os.34954.1.S1_at--1144--10631Chr03:1006238..1006262 (25 bp)
TTCGCCTCCAGCGAGGTGAGCGAGA
LOC_Os03g02740
Os.34954.1.S1_at--1040--671Chr03:1006214..1006238 (25 bp)
ATGAGAGGGCACCTCGTCAAGTACC
LOC_Os03g02740
Os.34954.1.S1_at--452--6571Chr03:1006030..1006054 (25 bp)
GATTCTTGTGAAAGCAGCCCTGGAC
LOC_Os03g02740
Os.34954.1.S1_at--319--3911Chr03:1006011..1006035 (25 bp)
CTGGACGCGTTGCATTCGTTGTAGA
LOC_Os03g02740
Target Sequence 
CGGCTAACATTAACCAGAGATCCATGGAAGGAACCAGAGACACCGAGATCGCCATGGGAGCGTACCAGCCCCAGTACACA
TGGGCAAACATGCTTTCTGCTCCTCGTGGACAGATCTACGGGTACAGGATGTCACTGTGGGCAGAGCACATTGGAGCGGT
GGAGGAAAGCTTCAGTTGCCCAGAGAGCCTGGAGTGCACGAGGCAGGTTCGGCACATCGGGGAGCAGAACTGGAGGCAGT
TCGCCTCCAGCGAGGTGAGCGAGATGAGAGGGCACCTCGTCAAGTACCCCGTCAGCGTCGCCCGCGACGGCAAGGTGAAG
CCCCTGCCGGGATGCGCCGCGTTCCCGGACCTCGGCGGCAACATCTGCGGCACGTTCCTGCCCATCCAAGAAAACCTCAC
CATATGAAACAGGATAAAGATGTTTTCGTTTGCGATTCTTGAGAAGGGATTCTTGTGAAAGCAGCCCTGGACGCGTTGCA
TTCGTTGTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34954.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis