Browse Element(s) Details


Os.9533.1.S1_at

Description gb:AK069220.1
DB_XREF= gi:32979244
TID=Os.9533.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9533 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative serine protease (OJ1263H11.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023012L19, full insert sequence.
FL= gb:AK069220.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0275011/11Subtilisin N-terminal Region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02700OsAffx.12714.1.S1_x_at11/113+986728..988856GMC oxidoreductase family protein
LOC_Os03g02700OsAffx.12714.1.S1_at11/113+986728..988856GMC oxidoreductase family protein
LOC_Os03g02710Os.20342.1.S1_at11/113+993651..998551Hydroxymethylglutaryl-CoA synthase, putative, expressed
LOC_Os03g02720Os.24783.1.A1_at11/113+999803..1002876expressed protein
LOC_Os03g02730Os.32472.1.S1_at10/113+1003077..1005106ABR017Cp, putative, expressed
LOC_Os03g02740Os.34954.1.S1_at11/113+1005935..1009991Phospholipase D beta 1, putative, expressed
LOC_Os03g02750Os.9533.1.S1_at11/113+1012328..1015016Subtilisin N-terminal Region family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009827biological_processcell wall modification (sensu Magnoliophyta)
GO:0010103biological_processstomatal complex morphogenesis
GO:0042127biological_processregulation of cell proliferation
GO:0005576cellular_componentextracellular region
GO:0009897cellular_componentexternal side of plasma membrane
GO:0048196cellular_componentextracellular matrix (sensu Magnoliophyta)
GO:0004252molecular_functionserine-type endopeptidase activity
GO:0004289molecular_functionsubtilase activity
GO:0008236molecular_functionserine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9533.1.S1_at--635--7171Chr03:1012859..1012883 (25 bp)
GTCGGGAAGGCCAACTCCGTGTACA
LOC_Os03g02750
Os.9533.1.S1_at--1030--8511Chr03:1012825..1012849 (25 bp)
TGGACATGCCCAAGAACGTCGCGGT
LOC_Os03g02750
Os.9533.1.S1_at--165--71Chr03:1012785..1012809 (25 bp)
ATTGCTGCGCTTCTCCAGGGCGTAC
LOC_Os03g02750
Os.9533.1.S1_at--473--3471Chr03:1012770..1012794 (25 bp)
CAGGGCGTACGAGAAGCAGAGCTTC
LOC_Os03g02750
Os.9533.1.S1_at--1064--8171Chr03:1012696..1012720 (25 bp)
GGAACCTCAAGTGGGTCTCCGACGA
LOC_Os03g02750
Os.9533.1.S1_at--847--4231Chr03:1012655..1012679 (25 bp)
CCGATCGTGATACCGCCAGCGAAGG
LOC_Os03g02750
Os.9533.1.S1_at--439--4491Chr03:1012631..1012655 (25 bp)
GCCGTCGTGTAGTGGATCGAATTGA
LOC_Os03g02750
Os.9533.1.S1_at--235--5151Chr03:1012603..1012627 (25 bp)
GCAAAATCAGCAGCTTCTCTGCTCG
LOC_Os03g02750
Os.9533.1.S1_at--231--10591Chr03:1012589..1012613 (25 bp)
TTCTCTGCTCGTGTTCGACGAGAGT
LOC_Os03g02750
Os.9533.1.S1_at--221--9031Chr03:1012560..1012584 (25 bp)
TGCACTCAGAGTACGTGTCCGGTGT
LOC_Os03g02750
Os.9533.1.S1_at--214--3091Chr03:1012333..1012357 (25 bp)
AATCAATTGGACTAGTACTCCTACT
LOC_Os03g02750
Target Sequence 
GTCGGGAAGGCCAACTCCGTGTACACCGCCGTGGTGGACATGCCCAAGAACGTCGCGGTCACCGTGCACCCGCCATTGCT
GCGCTTCTCCAGGGCGTACGAGAAGCAGAGCTTCACGGTGACCGTGCGGTGGGCAGGGCAGCCGGCCGTCGCCGGCGTCG
AGGGGAACCTCAAGTGGGTCTCCGACGAGCACGTCGTGAGGAGCCCGATCGTGATACCGCCAGCGAAGGCCGTCGTGTAG
TGGATCGAATTGAGCAGCAAAATCAGCAGCTTCTCTGCTCGTGTTCGACGAGAGTAGAATGCACTCAGAGTACGTGTCCG
GTGTACGTAACGTATGGCGACGTAGGCGTATTACGGATCGATTTGTTGTATAGGGCTACCGATCGTTGTAACGGCAGCAA
GCTCAGCTGCAACGGAGTTGTGTAAATACTGGAAAAATAATGGATTTTTAGTCTGTAAGATGACTCGATCGATCCGGCNN
NNNNANNANNNNNNNNAANNNANNCNANTACTGGTACAGATCATAAAATCAATTGGACTAGTACTCCTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9533.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis