Browse Element(s) Details


Os.32472.1.S1_at

Description gb:AK071417.1
DB_XREF= gi:32981440
TID=Os.32472.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.32472 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Unknown protein (OJ1263H11.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023091L16, full insert sequence.
FL= gb:AK104441.1 gb:AK104225.1 gb:AK071417.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0273010/11ABR017Cp, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02680Os.11723.1.S1_s_at11/113+975945..979582Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g02680Os.11723.2.S1_s_at11/113+975945..979582Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g02680Os.11723.3.S1_at11/113+975945..979582Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g02680Os.11723.4.S1_x_at10/113+975945..979582Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g02690OsAffx.3115.1.S1_x_at11/113+982673..985614Dihydrodipicolinate reductase, C-terminus family protein, expressed
LOC_Os03g02690Os.49168.1.S1_s_at11/113+982673..985614Dihydrodipicolinate reductase, C-terminus family protein, expressed
LOC_Os03g02700OsAffx.12714.1.S1_x_at11/113+986728..988856GMC oxidoreductase family protein
LOC_Os03g02700OsAffx.12714.1.S1_at11/113+986728..988856GMC oxidoreductase family protein
LOC_Os03g02710Os.20342.1.S1_at11/113+993651..998551Hydroxymethylglutaryl-CoA synthase, putative, expressed
LOC_Os03g02720Os.24783.1.A1_at11/113+999803..1002876expressed protein
LOC_Os03g02730Os.32472.1.S1_at10/113+1003077..1005106ABR017Cp, putative, expressed
LOC_Os03g02740Os.34954.1.S1_at11/113+1005935..1009991Phospholipase D beta 1, putative, expressed
LOC_Os03g02750Os.9533.1.S1_at11/113+1012328..1015016Subtilisin N-terminal Region family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32472.1.S1_at--674--10151Chr03:1004277..1004301 (25 bp)
TATCTGTGACAGATCCTTTGCTTGC
LOC_Os03g02730
Os.32472.1.S1_at--964--10271Chr03:1004261..1004285 (25 bp)
TTTGCTTGCTCAGACCATTTGGGAA
LOC_Os03g02730
Os.32472.1.S1_at--750--2251Chr03:1004175..1004195 (21 bp)
AAATATCAGGTTCTACAGGTACACT
LOC_Os03g02730
Os.32472.1.S1_at--1025--311Chr03:1003977..1004001 (25 bp)
ATACTTTGCTAATATACCTCTCTGG
LOC_Os03g02730
Os.32472.1.S1_at--673--2931Chr03:1003939..1003963 (25 bp)
AAGGAATCATCAGGGCAAGCTCTTG
LOC_Os03g02730
Os.32472.1.S1_at--965--6051NONE
GAGTTGTCGCTGAGGTTGCTCCAGT
NONE
Os.32472.1.S1_at--909--1111Chr03:1003324..1003348 (25 bp)
AGTGCAAGGACTGGCTCTACTCCAT
LOC_Os03g02730
Os.32472.1.S1_at--919--2831Chr03:1003245..1003269 (25 bp)
AAGTATGTGCTTCGTTCTGATGTTG
LOC_Os03g02730
Os.32472.1.S1_at--1085--8531Chr03:1003208..1003232 (25 bp)
TGGAGAATTCTCCATGCTTGTGTTG
LOC_Os03g02730
Os.32472.1.S1_at--971--5331Chr03:1003184..1003208 (25 bp)
GAAGTACTATAGACCTGAGCATGCT
LOC_Os03g02730
Os.32472.1.S1_at--525--9751Chr03:1003158..1003182 (25 bp)
TAGACGAACGGCTAACTTTTCCATT
LOC_Os03g02730
Target Sequence 
TATCTGTGACAGATCCTTTGCTTGCTCAGACCATTTGGGAATCTGGGATAAACAAANATATTTGAGGACATCAGCATCTC
TGGCAAAGTAGCAACCAGCTTGAATCCAAATATCAGGTTCTACAGGTACACTGAAGGTCAGCGATTCGGTAGGCATATTG
ATGAGAGTGTCGACCTTGGAGATGGTTCAAGAACATTGTATACTTTGCTAATATACCTCTCTGGCAAAGGAAGTGCAAAG
GAATCATCAGGGCAAGCTCTTGTTGGAGGGGAGACTGTTTTTTATGATCATCGTGGAGGAGTTGTCGCTGAGGTTGCTCC
AGTGCAAGGACTGGCTCTACTCCATCTTCATGGTGCCAAATGCATGCTGCATGAAGCACGGGTTGTGAAAAAGAATATCA
AGTATGTGCTTCGTTCTGATGTTGTATTTGCTTAGCTGGAGAATTCTCCATGCTTGTGTTGAAGTACTATAGACCTGAGC
ATGCTATAGACGAACGGCTAACTTTTCCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32472.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis