Browse Element(s) Details


Os.20342.1.S1_at

Description gb:AK071039.1
DB_XREF= gi:32981062
TID=Os.20342.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.20342 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative hydroxymethylglutaryl coenzyme A synthase (OJ1263H11.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023079L19, full insert sequence.
FL= gb:AK071039.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0271011/11Hydroxymethylglutaryl-CoA synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02670Os.27602.1.S1_at11/113+969463..973054UDP-galactose transporter, putative, expressed
LOC_Os03g02670Os.7088.1.S1_at1/113+969463..973054UDP-galactose transporter, putative, expressed
LOC_Os03g02680Os.11723.1.S1_s_at11/113+975945..979582Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g02680Os.11723.2.S1_s_at11/113+975945..979582Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g02680Os.11723.3.S1_at11/113+975945..979582Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g02680Os.11723.4.S1_x_at10/113+975945..979582Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g02690OsAffx.3115.1.S1_x_at11/113+982673..985614Dihydrodipicolinate reductase, C-terminus family protein, expressed
LOC_Os03g02690Os.49168.1.S1_s_at11/113+982673..985614Dihydrodipicolinate reductase, C-terminus family protein, expressed
LOC_Os03g02700OsAffx.12714.1.S1_x_at11/113+986728..988856GMC oxidoreductase family protein
LOC_Os03g02700OsAffx.12714.1.S1_at11/113+986728..988856GMC oxidoreductase family protein
LOC_Os03g02710Os.20342.1.S1_at11/113+993651..998551Hydroxymethylglutaryl-CoA synthase, putative, expressed
LOC_Os03g02720Os.24783.1.A1_at11/113+999803..1002876expressed protein
LOC_Os03g02730Os.32472.1.S1_at10/113+1003077..1005106ABR017Cp, putative, expressed
LOC_Os03g02740Os.34954.1.S1_at11/113+1005935..1009991Phospholipase D beta 1, putative, expressed
LOC_Os03g02750Os.9533.1.S1_at11/113+1012328..1015016Subtilisin N-terminal Region family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004421molecular_functionhydroxymethylglutaryl-CoA synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20342.1.S1_at--269--2571Chr03:997849..997870 (22 bp)
AACTGGAGTCCAGGCATGTGGTTGC
LOC_Os03g02710
Os.20342.1.S1_at--870--6511Chr03:998042..998066 (25 bp)
GATTTCACGACGAGCCAGGACACGA
LOC_Os03g02710
Os.20342.1.S1_at--1158--7011Chr03:998113..998137 (25 bp)
GTACAGGAGGTTCTACGCCGTCAAA
LOC_Os03g02710
Os.20342.1.S1_at--992--7071Chr03:998132..998156 (25 bp)
GTCAAAGGTCAAGCCGTCACCGAAG
LOC_Os03g02710
Os.20342.1.S1_at--64--7111Chr03:998147..998171 (25 bp)
GTCACCGAAGTGTCCAATGGCCATT
LOC_Os03g02710
Os.20342.1.S1_at--807--7931Chr03:998304..998328 (25 bp)
GGATTAGTTGGTTCGCTATTCGCTA
LOC_Os03g02710
Os.20342.1.S1_at--232--6691Chr03:998314..998338 (25 bp)
GTTCGCTATTCGCTAGTAAGGCTTA
LOC_Os03g02710
Os.20342.1.S1_at--1019--4891Chr03:998334..998358 (25 bp)
GCTTACTTGGTGAAATGGTATCTCC
LOC_Os03g02710
Os.20342.1.S1_at--365--7851Chr03:998350..998374 (25 bp)
GGTATCTCCACTTCGTTAATGTTCT
LOC_Os03g02710
Os.20342.1.S1_at--1086--8511Chr03:998379..998403 (25 bp)
TGGAACACACGGTAGCGAGCTGTAA
LOC_Os03g02710
Os.20342.1.S1_at--781--5211Chr03:998404..998428 (25 bp)
GAATTCTTAATAATCTGCCGTCCCG
LOC_Os03g02710
Target Sequence 
AACTGGAGTCCAGGCATGTGGTTGCGCCGGAGAAGTTCGTGGCGGCGCTGAAGCTGATGGAGCACCGGTACGGCGCCAAG
GATTTCACGACGAGCCAGGACACGAGCCTGCTCGCTCCAGGCACCTACTACCTCACCCACGTCGACTCCATGTACAGGAG
GTTCTACGCCGTCAAAGGTCAAGCCGTCACCGAAGTGTCCAATGGCCATTGAAAAAATTGTGTTNGTGATGTGNTGGTTC
ATTCAACCTGAAGNCTGCNATAAGCCNACGGCATAGAGGGTTCAGGGCGTGGGTGTACCANAGTNTTTCTGATGAAAGCT
TGTAAAGGGTGCTAGGTTAGAGCTGTTGGATTAGTTGGTTCGCTATTCGCTAGTAAGGCTTACTTGGTGAAATGGTATCT
CCACTTCGTTAATGTTCTTCAGTGGAACACACGGTAGCGAGCTGTAAGAATTCTTAATAATCTGCCGTCCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20342.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis