Browse Element(s) Details


Os.52415.1.S1_at

Description gb:AK066976.1
DB_XREF= gi:32976994
TID=Os.52415.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52415 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033119F23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013089D16, full insert sequence.
FL= gb:AK066976.1 gb:AK103116.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3139011/11Vacuolar protein sorting 11, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31340Os.14139.1.S1_at11/114+18559522..18564663SNF1-related protein kinase regulatory gamma subunit 1, putative, expressed
LOC_Os04g31350Os.49054.1.S1_at10/114+18570301..18571461expressed protein
LOC_Os04g31360OsAffx.26268.1.S1_at11/114+18573803..18574312hypothetical protein
LOC_Os04g31370Os.47130.4.A1_x_at1/114+18578034..18578360retrotransposon protein, putative, unclassified
LOC_Os04g31390Os.52415.1.S1_at11/114+18583326..18588735Vacuolar protein sorting 11, putative, expressed
LOC_Os04g31400OsAffx.3965.1.S1_at11/114+18592234..18595932expressed protein
LOC_Os04g31410Os.51437.1.S1_at11/114+18599036..18599823expressed protein
LOC_Os04g31420Os.46012.2.S1_x_at8/114+18603406..18608201retrotransposon protein, putative, unclassified
LOC_Os04g31420Os.46012.3.S1_x_at7/114+18603406..18608201retrotransposon protein, putative, unclassified
LOC_Os04g31420Os.27088.1.A1_x_at6/114+18603406..18608201retrotransposon protein, putative, unclassified
LOC_Os04g31420Os.54691.1.S1_x_at1/114+18603406..18608201retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0007033biological_processvacuole organization and biogenesis
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52415.1.S1_at--942--571Chr04:18588244..18588268 (25 bp)
ATGCCCAGAATGTGCTCCCGAATAT
LOC_Os04g31390
Os.52415.1.S1_at--169--1391Chr04:18588313..18588337 (25 bp)
AGACCATGATCTCTTCTTCAGGCAG
LOC_Os04g31390
Os.52415.1.S1_at--765--2311Chr04:18588349..18588373 (25 bp)
AAAGGATGGCTTCTCTGTCGTCGCA
LOC_Os04g31390
Os.52415.1.S1_at--1002--6071Chr04:18588397..18588421 (25 bp)
GAGTAAAACAGCCATTCCTCCTGAA
LOC_Os04g31390
Os.52415.1.S1_at--1082--8931Chr04:18588478..18588502 (25 bp)
TGACGATGTTTTATCTCCTTTCCCA
LOC_Os04g31390
Os.52415.1.S1_at--1001--8891Chr04:18588521..18588545 (25 bp)
TGAGTTTCAGGGTCCATCACACAGC
LOC_Os04g31390
Os.52415.1.S1_at--873--9991Chr04:18588562..18588586 (25 bp)
TAGCGAGTTCCTCTAGTGTACCAAC
LOC_Os04g31390
Os.52415.1.S1_at--228--2531Chr04:18588584..18588608 (25 bp)
AACTTATGTATGCTTTCTGGCCTAT
LOC_Os04g31390
Os.52415.1.S1_at--1101--10351Chr04:18588610..18588634 (25 bp)
TTTTGTGGCCGTGCTATGGAGTTCT
LOC_Os04g31390
Os.52415.1.S1_at--596--2271Chr04:18588652..18588676 (25 bp)
AAATCCTTCTGTTGGCAAACGCTGC
LOC_Os04g31390
Os.52415.1.S1_at--1037--6551Chr04:18588709..18588733 (25 bp)
GATTCACGGCCATCATGTTTGAGTT
LOC_Os04g31390
Target Sequence 
ATGCCCAGAATGTGCTCCCGAATATAGATCTGTCATGGAGGCAAAGCAGAAGCTAGAACATAACGCTAGAGACCATGATC
TCTTCTTCAGGCAGCTGAGGGGTTCAAAGGATGGCTTCTCTGTCGTCGCAGACTATTTTAGCAAGGGCATTGTGAGTAAA
ACAGCCATTCCTCCTGAAAATGGCCGATAAGGAGTGGAAGAAAACCAGCTCTATTACTCCCCATGTACAGGATTTGACGA
TGTTTTATCTCCTTTCCCATGGTGTTTTGTCATCATGTGAGTTTCAGGGTCCATCACACAGCATGTGCAGGCCTTTAATA
GCGAGTTCCTCTAGTGTACCAACTTATGTATGCTTTCTGGCCTATTTTTTGTGGCCGTGCTATGGAGTTCTGTTGTGCTT
GACATTGTAAATCCTTCTGTTGGCAAACGCTGCCTAGTTTTTGGCATTTAGTTTTGATGGAAGAAGATTCACGGCCATCA
TGTTTGAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52415.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis