Browse Element(s) Details


Os.52448.1.S1_x_at

Description gb:AK067897.1
DB_XREF= gi:32977915
TID=Os.52448.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52448 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013123L13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013123L13, full insert sequence.
FL= gb:AK067897.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5791011/11expressed protein
LOC_Os04g580401/11hypothetical protein
LOC_Os11g254401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57854Os.49622.1.S1_at11/113+32896843..32903489BTB/POZ domain containing protein, expressed
LOC_Os03g57870Os.28012.1.S1_at9/113+32903614..32906711Activator 1 38 kDa subunit, putative, expressed
LOC_Os03g57880OsAffx.25749.1.S1_s_at11/113+32909830..32912190Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os03g57880OsAffx.25749.1.S1_at11/113+32909830..32912190Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os03g57890Os.12059.1.S1_at11/113+32913214..32915847AN1-like Zinc finger family protein, expressed
LOC_Os03g57900Os.49768.1.S1_at11/113+32921106..32921903AN1-like Zinc finger family protein, expressed
LOC_Os03g57910Os.52448.1.S1_at11/113+32923450..32925085expressed protein
LOC_Os03g57910Os.52448.1.S1_x_at11/113+32923450..32925085expressed protein
LOC_Os03g57910Os.52448.2.S1_at5/113+32923450..32925085expressed protein
LOC_Os03g57920Os.55594.1.S1_at11/113+32925978..32927052AN1-like Zinc finger family protein, expressed
LOC_Os03g57930OsAffx.13535.1.S1_at11/113+32927968..32928849expressed protein
LOC_Os03g57940Os.21838.1.S1_at11/113+32938457..32945832protein kinase family protein, putative, expressed
LOC_Os03g57950OsAffx.25750.1.S1_at11/113+32949889..32953330inositol-1, 4, 5-trisphosphate 5-Phosphatase-like protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52448.1.S1_x_at--433--10753Chr11:2348008..2348032 (25 bp)
TTGATGGCGACGTCACGGCCGGTGA
NONE
Os.52448.1.S1_x_at--374--3813Chr11:2348097..2348121 (25 bp)
CTCCGTGCCTGTGGCTTCTGCAATG
NONE
Os.52448.1.S1_x_at--1001--1598Chr10:21038259..21038284 (25 bp)
AGCTGCCTACCCAAACAGAAGAGTG
NONE
Os.52448.1.S1_x_at--146--9671Chr03:32923634..32923658 (25 bp)
TCAGCCGCCATGTAGATAAATACCG
LOC_Os03g57910
Os.52448.1.S1_x_at--1026--2331Chr03:32923604..32923628 (25 bp)
AAACCACCGAGGGACATTAGGTGAT
LOC_Os03g57910
Os.52448.1.S1_x_at--550--7591Chr03:32923594..32923618 (25 bp)
GGGACATTAGGTGATCGGTTTTATA
LOC_Os03g57910
Os.52448.1.S1_x_at--114--10351Chr03:32923576..32923600 (25 bp)
TTTTATATAGTTAAGTACCTCGCAT
LOC_Os03g57910
Os.52448.1.S1_x_at--60--6992Chr11:13630254..13630310 (25 bp)
GTACCTCGCATATCTGGTTTTACGG
NONE
Os.52448.1.S1_x_at--791--4957Chr11:17567191..17567212 (22 bp)
GCATATCTGGTTTTACGGTTCGAAG
NONE
Os.52448.1.S1_x_at--1069--9274Chr03:20604679..20604698 (20 bp)
TCCGATTACAAGTTGAGGGACCCTC
NONE
Os.52448.1.S1_x_at--511--10291Chr03:32923485..32923509 (25 bp)
TTTCCATCTAAAAATCCTTTGTTGA
LOC_Os03g57910
Target Sequence 
TTGATGGCGACGTCACGGCCGGTGAGGAGGTCAACGCCGGCCTCCCCGCTCCCCTTGCTTGCCTACCTCATCCCTCGATG
GCGGTCCGCCTCCGTGCCTGTGGCTTCTGCAATGGCGGACGAGAGCAATGGCGGCGGCGCGTCGCCAGTCGCCAGCCGCC
GTCGTCGTGTCGCCCGTCGCCGGCCGCCGACGCCCTCGTCCTCTCCCTCCTCGCCCCACCGAAGGCAGCAACCCACCGAC
GTCCTCCCCAGCTGCCTACCCAAACAGAAGAGTGAGAGAGAGGAGAAAGGGAGAGGAGGGGAGAGAGTGATGACGTGGCC
AGCTGACATGTGGGGCCCACGTGGGTCCCGCGCTGACTCAGCCGCCATGTAGATAAATACCGGGTTAAAACCACCGAGGG
ACATTAGGTGATCGGTTTTATATAGTTAAGTACCTCGCATATCTGGTTTTACGGTTCGAAGATATTTTTTATTCCGATTA
CAAGTTGAGGGACCCTCGGTTTACTTTTTCCATCTAAAAATCCTTTGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52448.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis