Browse Element(s) Details


Os.5246.1.S1_at

Description gb:CB632213
DB_XREF= gi:29627202
DB_XREF=OSIIEb10F05.r
CLONE=OSIIEb10F05
TID=Os.5246.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.5246 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T00980 (A.thaliana) T00980 hypothetical protein T9J22.14 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g276805/11retrotransposon protein, putative, Ty1-copia subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g27640NANA6+15642730..15644362retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g27650Os.53553.1.S1_at11/116+15647700..15658327Uncharacterized ACR, COG2135 family protein, expressed
LOC_Os06g27650Os.39422.1.S1_at11/116+15647700..15658327Uncharacterized ACR, COG2135 family protein, expressed
LOC_Os06g27660OsAffx.15631.1.S1_at11/116+15659552..15659803hypothetical protein
LOC_Os06g27670OsAffx.15632.1.S1_at11/116+15661500..15662873hypothetical protein
LOC_Os06g27680Os.5246.1.S1_at5/116+15664969..15669541retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os06g27690NANA6+15678536..15680957retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g27700OsAffx.15648.1.S1_at1/116+15682978..15686666Zinc knuckle family protein
LOC_Os06g27700OsAffx.6300.1.S1_at1/116+15682978..15686666Zinc knuckle family protein
LOC_Os06g27710NANA6+15687316..15688566hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5246.1.S1_at--989--10271Chr06:15667635..15667659 (25 bp)
TTTACTGACGAAGCAACACAGAAAC
LOC_Os06g27680
Os.5246.1.S1_at--619--5791Chr06:15667641..15667665 (25 bp)
GACGAAGCAACACAGAAACAAGATG
LOC_Os06g27680
Os.5246.1.S1_at--1132--431Chr06:15667931..15667955 (25 bp)
ATCTTCAATGTCAAGTAGTGTGTCT
LOC_Os06g27680
Os.5246.1.S1_at--641--6931Chr06:15667945..15667969 (25 bp)
GTAGTGTGTCTAATATTTTGCTAAT
LOC_Os06g27680
Os.5246.1.S1_at--19--10291Chr06:15667961..15667984 (24 bp)
TTTGCTAATGATGTATTCCCTTCGA
LOC_Os06g27680
Os.5246.1.S1_at--555--8871NONE
TGATGTATTCCCTTCGATTCACAAT
NONE
Os.5246.1.S1_at--671--8771NONE
TGTATTCCCTTCGATTCACAATGTA
NONE
Os.5246.1.S1_at--174--2851NONE
AAGTAAGCAGGTACTGCCTCTGGCT
NONE
Os.5246.1.S1_at--136--7071NONE
GTAAGCAGGTACTGCCTCTGGCTGT
NONE
Os.5246.1.S1_at--194--2631NONE
AACCTGAGCGTTGCATGGGTCATAT
NONE
Os.5246.1.S1_at--904--4631NONE
GCGTTGCATGGGTCATATTTAATAT
NONE
Target Sequence 
TTTACTGACGAAGCAACACAGAAACAAGATGCTTTAAGATTGAAGAGGAAGAACGAGGATGATGAAGTTCATGCGGATAA
AGTGATGGAGAAGAGTGGCAGATCTCCTGTTCATGTGAAAAAGAAGGTAAAAGGCCCGAAACCTGCTTCGGTTGGACAAG
CATCACTGCTTTCCTATTTTGCAAAGAAGTAGTTTCTCAAGTAATGTTAGTGCTGACTCTGTCCCTCGGAAGTACATCAC
CTTATTTAGCAGCTACTACCTTATTTTTCTCTCTTTTTTGAGGTAAATTAGAGGCTATCTTCAATGTCAAGTAGTGTGTC
TAATATTTTGCTAATGATGTATTCCCTTCGATTCACAATGTAAGTCATTTTAGCATTTCCTATATTCATATTGATGTTAA
TGAATCTAGACATATATATCTATTTAGATTCATTAACATCAATATGAATGTGAAAAATAGTAGAATGACTTATATATTGT
GAAACGGAGGAAGTAAGCAGGTACTGCCTCTGGCTGTCAACCTGAGCGTTGCATGGGTCATATTTAATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5246.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis