Browse Element(s) Details


Os.53553.1.S1_at

Description gb:AK073255.1
DB_XREF= gi:32983278
TID=Os.53553.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53553 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033021D15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033021D15, full insert sequence.
FL= gb:AK073255.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2765011/11Uncharacterized ACR, COG2135 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g27610OsAffx.18868.4.S1_at11/116+15620655..15623546hypothetical protein
LOC_Os06g27610OsAffx.18868.5.S1_x_at1/116+15620655..15623546hypothetical protein
LOC_Os06g27610Os.50767.1.S1_x_at1/116+15620655..15623546hypothetical protein
LOC_Os06g27620OsAffx.27837.1.S1_at11/116+15626840..15627547hypothetical protein
LOC_Os06g27620OsAffx.6927.1.S1_at1/116+15626840..15627547hypothetical protein
LOC_Os06g27630NANA6+15628986..15630821hypothetical protein
LOC_Os06g27640NANA6+15642730..15644362retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g27650Os.53553.1.S1_at11/116+15647700..15658327Uncharacterized ACR, COG2135 family protein, expressed
LOC_Os06g27650Os.39422.1.S1_at11/116+15647700..15658327Uncharacterized ACR, COG2135 family protein, expressed
LOC_Os06g27660OsAffx.15631.1.S1_at11/116+15659552..15659803hypothetical protein
LOC_Os06g27670OsAffx.15632.1.S1_at11/116+15661500..15662873hypothetical protein
LOC_Os06g27680Os.5246.1.S1_at5/116+15664969..15669541retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os06g27690NANA6+15678536..15680957retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g27700OsAffx.15648.1.S1_at1/116+15682978..15686666Zinc knuckle family protein
LOC_Os06g27700OsAffx.6300.1.S1_at1/116+15682978..15686666Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53553.1.S1_at--425--7471Chr06:15657753..15657777 (25 bp)
GTGTGGTCACTAGTTCTTTGAAGTC
LOC_Os06g27650
Os.53553.1.S1_at--1094--8991Chr06:15657771..15657795 (25 bp)
TGAAGTCTGGGCTATTTCTCCACTC
LOC_Os06g27650
Os.53553.1.S1_at--830--4291Chr06:15657812..15657836 (25 bp)
GCAAGTTTTCGTGTTGGTTGTCAAA
LOC_Os06g27650
Os.53553.1.S1_at--572--7591Chr06:15657871..15657895 (25 bp)
GGGCTTAACTCTCTTATTATCTTGG
LOC_Os06g27650
Os.53553.1.S1_at--41--171Chr06:15657886..15657910 (25 bp)
ATTATCTTGGTCACGTGGGCAATCT
LOC_Os06g27650
Os.53553.1.S1_at--889--2971Chr06:15657937..15657961 (25 bp)
AATGGTGTTACTCCTAGCATGGCGG
LOC_Os06g27650
Os.53553.1.S1_at--476--871Chr06:15657955..15657979 (25 bp)
ATGGCGGATGTGATTCTGTCCATCA
LOC_Os06g27650
Os.53553.1.S1_at--1084--3312Chr06:15657992..15658016 (25 bp)
CACTATGGTGTATGGCGGGAGCTTC
LOC_Os06g27650
Os.53553.1.S1_at--780--5911Chr06:15658010..15658034 (25 bp)
GAGCTTCTAGGCTCCAAGAGCTGTT
LOC_Os06g27650
Os.53553.1.S1_at--937--5192Chr07:12806619..12806642 (24 bp)
GCAATAGCTCTTGTGCCCTAGGAGG
NONE
Os.53553.1.S1_at--981--251Chr06:15658142..15658166 (25 bp)
ATATGCACATCTCATGCGTGTTCGA
LOC_Os06g27650
Target Sequence 
GTGTGGTCACTAGTTCTTTGAAGTCTGGGCTATTTCTCCACTCTTCCGAACCATGACACGCAAGTTTTCGTGTTGGTTGT
CAAAGGCAGTAAAAGGGTTGCGAATGAGCGAGAAGAAAGGGCTTAACTCTCTTATTATCTTGGTCACGTGGGCAATCTGG
AAACACAGAAATGCTTGTGTTTCCAATGGTGTTACTCCTAGCATGGCGGATGTGATTCTGTCCATCACTAATGAGGGCAC
ACTATGGTGTATGGCGGGAGCTTCTAGGCTCCAAGAGCTGTTAGCCAAGGCAATAGCTCTTGTGCCCTAGGAGGGGGGCG
AATGTGGGTGTGTTTCTTTGTGTTTTTGTTTTTGTAAGTCCGAACATTTATTCTTTGCTTAATGAAATGATATGCACATC
TCATGCGTGTTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53553.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis