Browse Element(s) Details


OsAffx.15632.1.S1_at

Description tigr:9634.m02632
TID=OsAffx.15632.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2767011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g27640NANA6+15642730..15644362retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g27650Os.53553.1.S1_at11/116+15647700..15658327Uncharacterized ACR, COG2135 family protein, expressed
LOC_Os06g27650Os.39422.1.S1_at11/116+15647700..15658327Uncharacterized ACR, COG2135 family protein, expressed
LOC_Os06g27660OsAffx.15631.1.S1_at11/116+15659552..15659803hypothetical protein
LOC_Os06g27670OsAffx.15632.1.S1_at11/116+15661500..15662873hypothetical protein
LOC_Os06g27680Os.5246.1.S1_at5/116+15664969..15669541retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os06g27690NANA6+15678536..15680957retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g27700OsAffx.15648.1.S1_at1/116+15682978..15686666Zinc knuckle family protein
LOC_Os06g27700OsAffx.6300.1.S1_at1/116+15682978..15686666Zinc knuckle family protein
LOC_Os06g27710NANA6+15687316..15688566hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15632.1.S1_at--257--2931Chr06:15662536..15662560 (25 bp)
AAGGACGTTTTGGTGACCTCTGATC
LOC_Os06g27670
OsAffx.15632.1.S1_at--396--1731Chr06:15662521..15662545 (25 bp)
ACCTCTGATCCAAGTTCCCGAAAGA
LOC_Os06g27670
OsAffx.15632.1.S1_at--101--4251Chr06:15662469..15662493 (25 bp)
CCGGGACTCCTCAAGCGACGACGAG
LOC_Os06g27670
OsAffx.15632.1.S1_at--448--6351Chr06:15662407..15662431 (25 bp)
GATGCGACTGCAAAGGTAGCCTCCC
LOC_Os06g27670
OsAffx.15632.1.S1_at--87--7091Chr06:15662249..15662364 (25 bp)
GTCAATCCACCAGGGTATCAACGCA
LOC_Os06g27670
OsAffx.15632.1.S1_at--499--6891Chr06:15662238..15662259 (22 bp)
GTATCAACGCAGGACAACCCAGACG
LOC_Os06g27670
OsAffx.15632.1.S1_at--872--151Chr06:15661939..15661963 (25 bp)
AGCTAACTCGATCCGGCCGAGTAAA
LOC_Os06g27670
OsAffx.15632.1.S1_at--243--6311Chr06:15661873..15661897 (25 bp)
GATGAGTGCCGCAGCTGACTCAGCC
LOC_Os06g27670
OsAffx.15632.1.S1_at--1043--3891Chr06:15661606..15661832 (25 bp)
CTGGTGACGGGACCTTCTGGTTCCA
LOC_Os06g27670
OsAffx.15632.1.S1_at--972--7571Chr06:15661551..15661575 (25 bp)
GGGCTTCGATGATGCAGCTGATAAG
LOC_Os06g27670
OsAffx.15632.1.S1_at--392--4731Chr06:15661535..15661559 (25 bp)
GCTGATAAGGCCTATGCCACTGTTG
LOC_Os06g27670
Target Sequence 
AAGGACGTTTTGGTGACCTCTGATCCAAGTTCCCGAAAGAAGAACCCGACGGGCTTAGGGGGTTCACCCGGGACTCCTCA
AGCGACGACGAGGACGGCGACTACCGCCTCCAGGGCTGCTAAGGCAGAGGATGCGACTGCAAAGGTAGCCTCCCATGGCC
CGACCAGGACCCCGAAGATTGGGGTCCACAAGACCCGTCAATCCACCAGGGTATCAACGCAGGACAACCCAGACGCTGCA
GCTGACTCGGCCCGGCCGAGTGGCGGAGATGCAGCGGGAGAGGAGGTAGGTGGTGGTAACGAGTCGACGGGCGCCGCAGC
TAACTCGATCCGGCCGAGTAAAGGAGATGTGGCAGGAGCGGAGGTAGGCGCTGGTGACGGGTCGATGAGTGCCGCAGCTG
ACTCAGCCCAACTGAGTGGTGGAAATGCGGCGGGAGCTGAGGGAGGCGCTGGTGACGGGACCTTCTGGTTCCAGGGAGGA
AGGGAGAAGGAAGCTCTGAAGGAGGGCTTCGATGATGCAGCTGATAAGGCCTATGCCACTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15632.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis