Browse Element(s) Details


Os.39422.1.S1_at

Description gb:CF291670
DB_XREF= gi:33660703
DB_XREF=14ROOT--02-D04.b1
CLONE=14ROOT--02-D04
TID=Os.39422.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.39422 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_180215.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2765011/11Uncharacterized ACR, COG2135 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g27610OsAffx.18868.4.S1_at11/116+15620655..15623546hypothetical protein
LOC_Os06g27610OsAffx.18868.5.S1_x_at1/116+15620655..15623546hypothetical protein
LOC_Os06g27610Os.50767.1.S1_x_at1/116+15620655..15623546hypothetical protein
LOC_Os06g27620OsAffx.27837.1.S1_at11/116+15626840..15627547hypothetical protein
LOC_Os06g27620OsAffx.6927.1.S1_at1/116+15626840..15627547hypothetical protein
LOC_Os06g27630NANA6+15628986..15630821hypothetical protein
LOC_Os06g27640NANA6+15642730..15644362retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g27650Os.53553.1.S1_at11/116+15647700..15658327Uncharacterized ACR, COG2135 family protein, expressed
LOC_Os06g27650Os.39422.1.S1_at11/116+15647700..15658327Uncharacterized ACR, COG2135 family protein, expressed
LOC_Os06g27660OsAffx.15631.1.S1_at11/116+15659552..15659803hypothetical protein
LOC_Os06g27670OsAffx.15632.1.S1_at11/116+15661500..15662873hypothetical protein
LOC_Os06g27680Os.5246.1.S1_at5/116+15664969..15669541retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os06g27690NANA6+15678536..15680957retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g27700OsAffx.15648.1.S1_at1/116+15682978..15686666Zinc knuckle family protein
LOC_Os06g27700OsAffx.6300.1.S1_at1/116+15682978..15686666Zinc knuckle family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39422.1.S1_at--692--9871Chr06:15652705..15652729 (25 bp)
TACAGTATGCATGTACTTGCTCAAT
LOC_Os06g27650
Os.39422.1.S1_at--330--4851Chr06:15652758..15652782 (25 bp)
GCTACAGAATGATTTGCACCTGGAT
LOC_Os06g27650
Os.39422.1.S1_at--460--4791Chr06:15652855..15652879 (25 bp)
GCTCCATCCTTCTGTCATATAGTGG
LOC_Os06g27650
Os.39422.1.S1_at--1073--4831Chr06:15652881..15652905 (25 bp)
GCTAATCGATGAGTGACATGCCAAT
LOC_Os06g27650
Os.39422.1.S1_at--1001--771Chr06:15652937..15652961 (25 bp)
ATGTGCTTGATTTTCCTCATTCCAA
LOC_Os06g27650
Os.39422.1.S1_at--347--7671Chr06:15653050..15653074 (25 bp)
GGGTTACCTGTTTTTCATCTCAGGA
LOC_Os06g27650
Os.39422.1.S1_at--704--1071Chr06:15653112..15653136 (25 bp)
AGGGAAACCACTAATTGTTGCTTGT
LOC_Os06g27650
Os.39422.1.S1_at--417--8811Chr06:15653127..15653151 (25 bp)
TGTTGCTTGTGATCTATTCTAGTAA
LOC_Os06g27650
Os.39422.1.S1_at--489--7771Chr06:15653166..15653190 (25 bp)
GGTGAATCACCAAGTACTCAATTAT
LOC_Os06g27650
Os.39422.1.S1_at--1155--151Chr06:15653186..15653210 (25 bp)
ATTATACACCTTCACTGAGAGCATG
LOC_Os06g27650
Os.39422.1.S1_at--304--6011Chr06:15653202..15653226 (25 bp)
GAGAGCATGAGACAACTCGCGAATA
LOC_Os06g27650
Target Sequence 
TACAGTATGCATGTACTTGCTCAATATTTGCTTGCATTGATNGAGGCTAAAAGGCTACAGAATGATTTGCACCTGGATGT
ANNNTTTGACATCTGGATTTATAGTAGTTTGATATAACTTCTGTNCTNCTCTTCTTGCTTTCCGTGTCTCGCTCCATCCT
TCTGTCATATAGTGGTGCTAATCGATGAGTGACATGCCAATTGTAGGATTTGACATAGGACTGTAGGTTTAGATGTGCTT
GATTTTCCTCATTCCAAACTATGAGGTATCTTAATTATATTTATTGAATATAAATCATGGGGGCATAGATTGCATGACAT
GTTAAATACATTGTACCGAATCTGGGGGTTACCTGTTTTTCATCTCAGGAATTGAGATAACTAGTTATTTTGATTGAGCA
AATCTATAGGGAAACCACTAATTGTTGCTTGTGATCTATTCTAGTAAAACCTTTGGCCAAAGGTGAATCACCAAGTACTC
AATTATACACCTTCACTGAGAGCATGAGACAACTCGCGAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39422.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis