Browse Element(s) Details


Os.52469.1.S1_at

Description gb:AK067317.1
DB_XREF= gi:32977335
TID=Os.52469.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52469 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013105D21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013105D21, full insert sequence.
FL= gb:AK067317.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g384701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38410NANA7+23084892..23085416hypothetical protein
LOC_Os07g38420Os.8050.1.S1_at11/117+23086238..23089224Prp18 domain containing protein, expressed
LOC_Os07g38430Os.24649.1.S1_at11/117+23090196..23092725Will die slowly protein, putative, expressed
LOC_Os07g38440Os.53714.1.S1_at11/117+23096870..23098755transposon protein, putative, unclassified, expressed
LOC_Os07g38440OsAffx.16614.1.S1_x_at11/117+23096870..23098755transposon protein, putative, unclassified, expressed
LOC_Os07g38440Os.11835.3.S1_x_at1/117+23096870..23098755transposon protein, putative, unclassified, expressed
LOC_Os07g38440OsAffx.12860.1.S1_at1/117+23096870..23098755transposon protein, putative, unclassified, expressed
LOC_Os07g38450NANA7+23099456..23103668retrotransposon protein, putative, unclassified
LOC_Os07g38460Os.22714.1.A1_at11/117+23104667..23106449expressed protein
LOC_Os07g38470Os.52469.1.S1_at1/117+23108774..23109097hypothetical protein
LOC_Os07g38480Os.15805.1.S1_at11/117+23110477..23112224expressed protein
LOC_Os07g38490Os.48830.1.S1_at11/117+23114152..23118126GDP-fucose protein-O-fucosyltransferase 2, putative, expressed
LOC_Os07g38500NANA7+23131297..23137267retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52469.1.S1_at--862--8111Chr07:23109004..23109028 (25 bp)
GGACGTGCAGATACTCTGGTCCATC
LOC_Os07g38470
Os.52469.1.S1_at--1058--1851Chr07:23109121..23109145 (25 bp)
ACGACGATGACGAACTCTTCCGGGC
NONE
Os.52469.1.S1_at--139--1871Chr07:23109233..23109257 (25 bp)
ACGACGAGCGGTGTTAGCAGCTTCG
NONE
Os.52469.1.S1_at--919--3391Chr07:23109250..23109274 (25 bp)
CAGCTTCGCCGTGGTAGGGAACAGA
NONE
Os.52469.1.S1_at--4--191Chr07:23109292..23109316 (25 bp)
ATTTCAGTTTCTTTCGCATTTTCGC
NONE
Os.52469.1.S1_at--271--4951Chr07:23109307..23109331 (25 bp)
GCATTTTCGCCAACGTTTTGAGCCA
NONE
Os.52469.1.S1_at--319--9511Chr07:23109370..23109394 (25 bp)
TCTCGCTTAGCTCGGATGTGTCTCA
NONE
Os.52469.1.S1_at--1114--7151Chr07:23109389..23109413 (25 bp)
GTCTCACCGACACTGCGAGCTAGGA
NONE
Os.52469.1.S1_at--180--6631Chr07:23109439..23109463 (25 bp)
GTTGTCACTCTCCTTTACTTTTCGA
NONE
Os.52469.1.S1_at--50--8171Chr07:23109468..23109492 (25 bp)
GGAACGGCACATGTAACGCTCGGTT
NONE
Os.52469.1.S1_at--628--751Chr07:23109478..23109502 (25 bp)
ATGTAACGCTCGGTTGGTGATCGCC
NONE
Target Sequence 
GGACGTGCAGATACTCTGGTCCATCCTCGTCGAGTCCTCCCACGGCGGCGGCCATCACCACCACCACCCGCAGCCGCTGC
GGCTGAAGCAGTGACAACGACGGCGGCGACGGCGACGACGACGATGACGAACTCTTCCGGGCCGGCGTCCGAGCGACGAG
CACGGCGCTCCGAGACGTAACCGACGGCGGCGCGGCGAGCAGCAAAGAGGTGTCGGTGTACATAAGAAGACGACGAGCGG
TGTTAGCAGCTTCGCCGTGGTAGGGAACAGAGCGAGAGAGTCGTTTTCATTTCAGTTTCTTTCGCATTTTCGCCAACGTT
TTGAGCCACGGAAATGGCGTGCATAAGCCGATGAGCTCCTCCTCTCTCTCGCTTAGCTCGGATGTGTCTCACCGACACTG
CGAGCTAGGAAGCGAGTTTTTTTTTTTTTTTTTCCTTTGGTTGTCACTCTCCTTTACTTTTCGAAAAAGGAACGGCACAT
GTAACGCTCGGTTGGTGATCGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52469.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis