Browse Element(s) Details


Os.52479.1.S1_at

Description gb:AK067394.1
DB_XREF= gi:32977412
TID=Os.52479.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52479 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013105M16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013105M16, full insert sequence.
FL= gb:AK067394.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1213011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g12080NANA5+6895481..6895831hypothetical protein
LOC_Os05g12090OsAffx.26845.1.S1_at11/115+6899083..6899367VQ motif family protein, expressed
LOC_Os05g12100OsAffx.26846.1.S1_at11/115+6902221..6902990expressed protein
LOC_Os05g12110OsAffx.26847.1.S1_at11/115+6905080..6905547hypothetical protein
LOC_Os05g12110OsAffx.26847.1.S1_x_at11/115+6905080..6905547hypothetical protein
LOC_Os05g12120OsAffx.26848.1.S1_at11/115+6907031..6907465hypothetical protein
LOC_Os05g12130Os.52479.1.S1_at11/115+6913172..6915906pentatricopeptide, putative, expressed
LOC_Os05g12140Os.8464.1.A1_at11/115+6916203..6919012Leucine Rich Repeat family protein, expressed
LOC_Os05g12150Os.51700.1.S1_at11/115+6921210..6923907Glycosyl hydrolase family 9 protein, expressed
LOC_Os05g12150Os.32667.2.S1_x_at1/115+6921210..6923907Glycosyl hydrolase family 9 protein, expressed
LOC_Os05g12160OsAffx.4310.1.S1_at11/115+6928117..6928627hypothetical protein
LOC_Os05g12170Os.13459.1.S1_at11/115+6936703..6943504uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os05g12170OsAffx.14653.1.S1_x_at11/115+6936703..6943504uncharacterized plant-specific domain TIGR01589 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52479.1.S1_at--127--3531Chr05:6915371..6915395 (25 bp)
CATGAGTTTCGAGCTGGTGACACCA
LOC_Os05g12130
Os.52479.1.S1_at--132--8211Chr05:6915455..6915479 (25 bp)
GGAATGGGCTATGTGCCGGACACAA
LOC_Os05g12130
Os.52479.1.S1_at--111--3611Chr05:6915481..6915505 (25 bp)
CATTGTGCTCCATGACATGTCGGAT
LOC_Os05g12130
Os.52479.1.S1_at--782--1191Chr05:6915519..6915543 (25 bp)
AGTATCTGCTTCAGCACAGCGAGAA
LOC_Os05g12130
Os.52479.1.S1_at--932--2151Chr05:6915534..6915558 (25 bp)
ACAGCGAGAAGATTGCCGTGGCATT
LOC_Os05g12130
Os.52479.1.S1_at--414--9771Chr05:6915601..6915625 (25 bp)
TAAGAACCTCCGTGTTTGTGCTGAT
LOC_Os05g12130
Os.52479.1.S1_at--1159--231Chr05:6915643..6915667 (25 bp)
ATATATGTCCAAGGCCACCAGAAGA
LOC_Os05g12130
Os.52479.1.S1_at--728--5231Chr05:6915731..6915755 (25 bp)
GAATACTGGTGAGCTGCACAGCGCA
LOC_Os05g12130
Os.52479.1.S1_at--411--3311Chr05:6915747..6915771 (25 bp)
CACAGCGCAGGTTTGTCTTTGCTAA
LOC_Os05g12130
Os.52479.1.S1_at--682--7151Chr05:6915761..6915785 (25 bp)
GTCTTTGCTAATGATCCTGATCCAG
LOC_Os05g12130
Os.52479.1.S1_at--820--6671Chr05:6915865..6915889 (25 bp)
GTTGCTTTCTGTTTTGTACAATCAC
LOC_Os05g12130
Target Sequence 
CATGAGTTTCGAGCTGGTGACACCAGCCATCCGCGAGCACAAGACATCTATGGTAAGTTGGACACATTGGTCGGAGAAAT
CAAAGGAATGGGCTATGTGCCGGACACAAGCATTGTGCTCCATGACATGTCGGATGAGCTGAAGGAGCAGTATCTGCTTC
AGCACAGCGAGAAGATTGCCGTGGCATTTGGTTTGATTACTACTTCAGCACCAAAACCAATCAGAATATTTAAGAACCTC
CGTGTTTGTGCTGATTGTCATTCTGCAATCAAATATATGTCCAAGGCCACCAGAAGAGAGATAATATTGAGAGATAGCAA
CAGGTTTCACAGGATGAAAGATGGGGAATGCTCGTGCGGAGAATACTGGTGAGCTGCACAGCGCAGGTTTGTCTTTGCTA
ATGATCCTGATCCAGGCTTAACACAGTGAAGCTTTTCTTAGATAGTTGTAGTTCATAATTTTTGTAGTTGCTTTGTATAG
TTCATAATTTTTTAGTTGCTTTCTGTTTTGTACAATCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52479.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis