Browse Element(s) Details


Os.52503.1.S1_at

Description gb:AK067558.1
DB_XREF= gi:32977576
TID=Os.52503.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52503 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013112K04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013112K04, full insert sequence.
FL= gb:AK067558.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0292010/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g02900Os.15076.1.S1_at11/114+1122969..1126811Pyruvate dehydrogenase E1 component alpha subunit, putative, expressed
LOC_Os04g02910Os.11963.1.S2_at11/114+1135888..1139302membrane related protein CP5, putative, expressed
LOC_Os04g02910Os.11963.1.S1_at11/114+1135888..1139302membrane related protein CP5, putative, expressed
LOC_Os04g02920Os.52503.1.S1_at10/114+1147740..1153958Leucine Rich Repeat family protein, expressed
LOC_Os04g02929NANA4+1154055..1154996NA
LOC_Os04g02940NANA4+1160712..1160975hypothetical protein
LOC_Os04g02950OsAffx.32056.1.S1_x_at11/114+1166629..1169784transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g02950OsAffx.32056.1.S1_at11/114+1166629..1169784transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g02960OsAffx.10637.1.S1_s_at11/114+1171439..1184186retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g02960OsAffx.10637.3.S1_s_at11/114+1171439..1184186retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g02960OsAffx.10637.4.S1_s_at8/114+1171439..1184186retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g02960OsAffx.19542.3.S1_x_at3/114+1171439..1184186retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g02960OsAffx.9949.1.S1_at1/114+1171439..1184186retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52503.1.S1_at--1000--8391Chr04:1153360..1153384 (25 bp)
GGCCCGATACCAGAGACATTCATGT
LOC_Os04g02920
Os.52503.1.S1_at--539--8551Chr04:1153397..1153421 (25 bp)
TGGAGAGCCTTGACCTCTCATACAA
LOC_Os04g02920
Os.52503.1.S1_at--704--8691Chr04:1153469..1153493 (25 bp)
TGTGCTCGTTCAATGTCGCCTACAA
LOC_Os04g02920
Os.52503.1.S1_at--1073--7731Chr04:1153504..1153528 (25 bp)
GGTGAGATACCCTTCCAACAACAGC
LOC_Os04g02920
Os.52503.1.S1_at--2--5611NONE
GACAATCTCTGTGGTGGAATCATCA
NONE
Os.52503.1.S1_at--1101--1971Chr04:1153595..1153619 (25 bp)
ACTGCTCATCAGTGCTGCATCAGAA
LOC_Os04g02920
Os.52503.1.S1_at--1051--5231Chr04:1153617..1153641 (25 bp)
GAATCAAGGAGTGTTCGACGCCATT
LOC_Os04g02920
Os.52503.1.S1_at--631--2151Chr04:1153643..1153667 (25 bp)
ACACGTCACTTGTTTTCTGGTCCTA
LOC_Os04g02920
Os.52503.1.S1_at--518--7611Chr04:1153784..1153808 (25 bp)
GGGAATTTGTGCCTTGAATCCTGAT
LOC_Os04g02920
Os.52503.1.S1_at--293--2731Chr04:1153839..1153863 (25 bp)
AAGACAGAGCAATCCCTTCTTTTTT
LOC_Os04g02920
Os.52503.1.S1_at--978--1291Chr04:1153872..1153896 (25 bp)
AGATGCACATGCTGTCACATCCTGA
LOC_Os04g02920
Target Sequence 
GGCCCGATACCAGAGACATTCATGTATATGCAGGATATGGAGAGCCTTGACCTCTCATACAACCACCTCAATGGCAGCCT
GCCTATGCAGCTGGCAAATCTCTCCTTCCTGTGCTCGTTCAATGTCGCCTACAACAACCTCTCTGGTGAGATACCCTTCC
AACAACAGCTTGGGACATTCGATGAATCGGCATTCGAGGGGAATGACAATCTCTGTGGTGGAATCATCAACAAAAACTGC
TCATCAGTGCTGCATCAGAATCAAGGAGTGTTCGACGCCATTGACACGTCACTTGTTTTCTGGTCCTACGTTTTTGGGTG
TTTTGCACTTGGATTTTGGGGCACCGTGGCATTGCTGATATGGGATGAAGTGTGCAGGAGGAGACTGTGTGACTTGATGG
ATGCTCTAATGTTTAAGCTGGGTTGGGAATTTGTGCCTTGAATCCTGATATGTCTAGCTAAGAGTCTAGGAGACATGGAA
AGACAGAGCAATCCCTTCTTTTTTTTTGCACGAGATGCACATGCTGTCACATCCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52503.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis