Browse Element(s) Details


Os.5252.1.S1_at

Description gb:AK073386.1
DB_XREF= gi:32983409
TID=Os.5252.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5252 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033041E22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033041E22, full insert sequence.
FL= gb:AK073386.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0928011/11Chitin-inducible gibberellin-responsive protein 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g09230Os.51190.1.S1_at11/113+4799798..4801840Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g09230OsAffx.25027.1.S1_s_at11/113+4799798..4801840Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g09250Os.10937.1.S1_at10/113+4804749..4808864Inositol-3-phosphate synthase, putative, expressed
LOC_Os03g09260Os.56967.1.S1_s_at10/113+4815259..4817300ubiquitin-specific protease 26, putative, expressed
LOC_Os03g09260Os.56967.1.S1_at8/113+4815259..4817300ubiquitin-specific protease 26, putative, expressed
LOC_Os03g09270Os.54409.1.S1_at11/113+4821393..4823472ubiquitin-specific protease 26, putative, expressed
LOC_Os03g09270OsAffx.12801.1.S1_s_at11/113+4821393..4823472ubiquitin-specific protease 26, putative, expressed
LOC_Os03g09280Os.5252.1.S1_at11/113+4826358..4832948Chitin-inducible gibberellin-responsive protein 2, putative, expressed
LOC_Os03g09290NANA3+4834333..4836648expressed protein
LOC_Os03g09300NANA3+4837255..4839490Pumilio-family RNA binding repeat containing protein
LOC_Os03g09310Os.6725.1.S1_at11/113+4841301..4845851expressed protein
LOC_Os03g09810NANA3+4855628..4859260Polyamine oxidase precursor, putative

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Gene Ontology Classification
GO idTypeName
GO:0009640biological_processphotomorphogenesis
GO:0045449biological_processregulation of transcription
GO:0005737cellular_componentcytoplasm
GO:0003700molecular_functiontranscription factor activity
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5252.1.S1_at--855--6251Chr03:4831505..4831529 (25 bp)
GATGGTGCCCTTTATCTTGGATGGA
LOC_Os03g09280
Os.5252.1.S1_at--119--6911Chr03:4831547..4831571 (25 bp)
GTATCTTCTGCATGGCGGTGACATC
LOC_Os03g09280
Os.5252.1.S1_at--582--3991Chr03:4832500..4832524 (25 bp)
CGTGGCTTCTTGGTGGACGCATGAA
LOC_Os03g09280
Os.5252.1.S1_at--3--2991Chr03:4832578..4832602 (25 bp)
AATGTGGTCGCTTGCTTGTTGGCAC
LOC_Os03g09280
Os.5252.1.S1_at--822--6911Chr03:4832619..4832643 (25 bp)
GTATGCTTACCATCCGTCAGATTTA
LOC_Os03g09280
Os.5252.1.S1_at--56--10071Chr03:4832651..4832675 (25 bp)
TAGGCAGAATACTCTTCCTGACTTC
LOC_Os03g09280
Os.5252.1.S1_at--747--3571Chr03:4832677..4832701 (25 bp)
CATAGTCCAGTCCAGTCGCAATATA
LOC_Os03g09280
Os.5252.1.S1_at--1029--2171Chr03:4832707..4832731 (25 bp)
ACACTGTACTGTTTTACCTGCTCAT
LOC_Os03g09280
Os.5252.1.S1_at--209--7251Chr03:4832740..4832764 (25 bp)
GTCCGTTTTATGTCGATCAGTCAAG
LOC_Os03g09280
Os.5252.1.S1_at--645--8591Chr03:4832834..4832858 (25 bp)
TGGTCACCAGAGTCCGTTTCTTGAT
LOC_Os03g09280
Os.5252.1.S1_at--566--7351Chr03:4832892..4832916 (25 bp)
GTGAATTCTGGATCCTATGCTACTA
LOC_Os03g09280
Target Sequence 
GATGGTGCCCTTTATCTTGGATGGAAGAACAGAAAGCTGGTTGTATCTTCTGCATGGCGGTGACATCTCCGTGTTAATTT
GGAAGAAGCTTCTTTAGGTTCTTTCGTGGCTTCTTGGTGGACGCATGAATCCAAGGTGGAACCTGATCTTCATAGAGNCA
GAGAGAACTCCATAGTCCAGAACAATGTGGTCGCTTGCTTGTTGGCACCCATCTCTAAACCCTCGTATGCTTACCATCCG
TCAGATTTAATCGCCATAGGCAGAATACTCTTCCTGACTTCCCATAGTCCAGTCCAGTCGCAATATAGGTGTACACTGTA
CTGTTTTACCTGCTCATGGTAGAATGTCCGTTTTATGTCGATCAGTCAAGTAGAGTCTGGTCACCAGAATCCCCGTCTTA
ATAGAACGTCTGTTTTAAAAGTCAGTCAAGAAGAGAGTCTGGTCACCAGAGTCCGTTTCTTGATCCTGCTCGTTGTNNAA
NANAATGACGTCTCAATGTGAATTCTGGATCCTATGCTACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5252.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis