Browse Element(s) Details


Os.52571.1.A1_at

Description gb:AK068071.1
DB_XREF= gi:32978089
TID=Os.52571.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52571 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013135E16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013135E16, full insert sequence.
FL= gb:AK068071.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3266011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32600OsAffx.6473.1.S1_at11/119+19454454..19457078F-box domain containing protein
LOC_Os09g32610Os.8515.1.A1_at1/119+19458688..19462253expressed protein
LOC_Os09g32620NANA9+19464287..19465759Chloroplastic quinone-oxidoreductase homolog, putative, expressed
LOC_Os09g32630OsAffx.30123.1.S1_at11/119+19466227..19466736hypothetical protein
LOC_Os09g32640Os.55534.1.A1_at11/119+19468469..19471212Chloroplastic quinone-oxidoreductase homolog, putative, expressed
LOC_Os09g32650Os.51218.1.S1_at11/119+19472098..19476734leucyl-tRNA synthetase family protein, expressed
LOC_Os09g32660Os.52571.1.A1_at11/119+19478243..19481680expressed protein
LOC_Os09g32670Os.18486.1.S1_at11/119+19485779..19487685NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g32680Os.187.1.S1_s_at11/119+19498552..19502722G1/S-specific cyclin C-type, putative, expressed
LOC_Os09g32680Os.187.1.S1_at11/119+19498552..19502722G1/S-specific cyclin C-type, putative, expressed
LOC_Os09g32690Os.6646.1.S1_at11/119+19502940..19506572Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g32690Os.8957.2.S1_x_at1/119+19502940..19506572Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g32700Os.27781.1.S1_at11/119+19506638..19508742expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52571.1.A1_at--821--571Chr09:19478807..19478831 (25 bp)
ATCCTTGGACTCTTGGAGACTCTGA
LOC_Os09g32660
Os.52571.1.A1_at--664--5591Chr09:19478740..19478764 (25 bp)
GAAATTCGAGGTCGTCGGTTCCTGC
LOC_Os09g32660
Os.52571.1.A1_at--626--5671Chr09:19478671..19478695 (25 bp)
GACATCGTCGCTCGATCGTATTAAA
LOC_Os09g32660
Os.52571.1.A1_at--863--6871Chr09:19478654..19478678 (25 bp)
GTATTAAACTCGACACCTGTGGTTA
LOC_Os09g32660
Os.52571.1.A1_at--18--10111Chr09:19478631..19478655 (25 bp)
TATGTTGGGCTTTGTGCTTCCGGCA
LOC_Os09g32660
Os.52571.1.A1_at--520--10651Chr09:19478614..19478638 (25 bp)
TTCCGGCAGTGGCAGATGTTACCCA
LOC_Os09g32660
Os.52571.1.A1_at--245--6231Chr09:19478568..19478592 (25 bp)
GAGGCCTGTAATTCAGTCTTGGCTA
LOC_Os09g32660
Os.52571.1.A1_at--246--1671Chr09:19478481..19478505 (25 bp)
AGCCGTTGCCCTGTACAGTAGATGC
LOC_Os09g32660
Os.52571.1.A1_at--191--10411Chr09:19478452..19478476 (25 bp)
TTATTACCGGTTACCATGCCCATAT
LOC_Os09g32660
Os.52571.1.A1_at--222--9931Chr09:19478399..19478423 (25 bp)
TACGGATTGCCGACATAACTTGTTG
LOC_Os09g32660
Os.52571.1.A1_at--110--2251Chr09:19478322..19478346 (25 bp)
AAATTACTCCAGCACTTGTTGAGCA
LOC_Os09g32660
Target Sequence 
ATCCTTGGACTCTTGGAGACTCTGAACAGCTGAGGCAGATGCCAGGACACCGCCATGACAGTCTCAAGAAATTCGAGGTC
GTCGGTTCCTGCTACGCGAAGGGCTTGGTCGAGCTAACATGTCATATCCTTGAGACGACATCGTCGCTCGATCGTATTAA
ACTCGACACCTGTGGTTATGTTGGGCTTTGTGCTTCCGGCAGTGGCAGATGTTACCCACATTATACAGAACAAATCATGG
AGGCCTGTAATTCAGTCTTGGCTATCAGGACATACATCATGGGGAAAGTTCCACCTACAGTGAAGTTTGAACTTGTTGAG
CCTTGCAGCCGTTGCCCTGTACAGTAGATGCTAAGTTATTACCGGTTACCATGCCCATATGTTTTTTTTAACCATTTTTT
TAAAACCCTACGGATTGCCGACATAACTTGTTGAGAAAGGATCATTGCATCCTAGTCAATATCTTTAATATATTTATTCA
CCCATAAATTACTCCAGCACTTGTTGAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52571.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis