Browse Element(s) Details


Os.52583.1.S1_at

Description gb:AK068162.1
DB_XREF= gi:32978180
TID=Os.52583.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52583 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013135N06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013135N06, full insert sequence.
FL= gb:AK068162.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4457011/11Mitochondrial carrier protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44540Os.49235.2.S1_x_at11/112+26976338..26981015expressed protein
LOC_Os02g44540Os.49235.1.S1_at10/112+26976338..26981015expressed protein
LOC_Os02g44540OsAffx.16132.1.S1_at1/112+26976338..26981015expressed protein
LOC_Os02g44550Os.52949.1.S1_s_at11/112+26982810..26988113NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os02g44550Os.8062.1.S1_at11/112+26982810..26988113NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os02g44550Os.8062.2.S1_x_at10/112+26982810..26988113NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os02g44550Os.52949.1.S1_at1/112+26982810..26988113NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os02g44560OsAffx.12493.1.S1_at11/112+27003151..27004148C2 domain containing protein
LOC_Os02g44570Os.52583.1.S1_at11/112+27004568..27009317Mitochondrial carrier protein, expressed
LOC_Os02g44580OsAffx.12494.1.S1_at11/112+27009337..27009837expressed protein
LOC_Os02g44590Os.3768.1.S1_at11/112+27012483..27015850Subtilisin N-terminal Region family protein, expressed
LOC_Os02g44600OsAffx.24724.1.S1_x_at11/112+27017431..27022547U-box domain containing protein, expressed
LOC_Os02g44610NANA2+27023315..27029874Protein kinase domain containing protein, expressed
LOC_Os02g44620OsAffx.12495.1.S1_at8/112+27032599..27034996hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005215molecular_functiontransporter activity
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52583.1.S1_at--935--9451Chr02:27008460..27008484 (25 bp)
TCTGTGGAGGTTTTGCTGGGTCTAC
LOC_Os02g44570
Os.52583.1.S1_at--482--3831Chr02:27008487..27008511 (25 bp)
CTGCTCTGTGTACAACTCCATTTGA
LOC_Os02g44570
Os.52583.1.S1_at--72--1391Chr02:27008520..27008540 (21 bp)
AGACGCGAGTACAGTTACAGGCACT
LOC_Os02g44570
Os.52583.1.S1_at--382--8251Chr02:27008714..27008738 (25 bp)
GGCACTCAGCCCTATTAGCAAGTAT
LOC_Os02g44570
Os.52583.1.S1_at--622--5091Chr02:27008774..27008798 (25 bp)
GCACGAAGGCTTGCAGGGTCTTTAC
LOC_Os02g44570
Os.52583.1.S1_at--11--7871Chr02:27008893..27008917 (25 bp)
GGTTTGGCTCCAAGGTTGGCTATGT
LOC_Os02g44570
Os.52583.1.S1_at--561--10371Chr02:27008939..27008963 (25 bp)
TTTTCACATCCTATGAGTTCCTCAA
LOC_Os02g44570
Os.52583.1.S1_at--650--8851Chr02:27009018..27009042 (25 bp)
TGATGCAGCGTGGTTCAGGAACACT
LOC_Os02g44570
Os.52583.1.S1_at--466--2651Chr02:27009199..27009223 (25 bp)
AACCAAACTGGTGAGCAGCCATTTT
LOC_Os02g44570
Os.52583.1.S1_at--94--3151Chr02:27009279..27009303 (25 bp)
AATTCCCTTACAAGCAACCTGTGAC
LOC_Os02g44570
Os.52583.1.S1_at--1083--3231Chr02:27009293..27009317 (25 bp)
CAACCTGTGACTGGATGTGCATCCT
LOC_Os02g44570
Target Sequence 
TCTGTGGAGGTTTTGCTGGGTCTACTGCTGCTCTGTGTACAACTCCATTTGATGTTGTTAAGACGCGAGTACAGTTACAG
GCACTCAGCCCTATTAGCAAGTATGATGGGGTTCTTCATGCGCTCAAAGAAATTTTTCAGCACGAAGGCTTGCAGGGTCT
TTACAGGGGTTTGGCTCCAAGGTTGGCTATGTATATATCTCAAGGGGCTATATTTTTCACATCCTATGAGTTCCTCAAAA
CAATTATGTTTTCTGAACAAGAGCTTCATGCAAGGAACTTTTGATCACAGAATGATGCAGCGTGGTTCAGGAACACTTAA
AGCATCTGAGTTTCAAGAACAATCTCATGAACTAAGTGGGATGGTTCTATTAGGCTAGAGGATTGTAGACTTGTGGTTAC
TGAACCAAACATTTCTTAGGTCTTGATAGTAAACATTTGTACAAGTGTACATTACATTTTTGGATACATAGGCAACCAAA
CTGGTGAGCAGCCATTTTTGAGTAGAAATCACATCTAGGAAAGCAAAATTTTGTATCATCAACACGGTTTGTAAATTCCC
TTACAAGCAACCTGTGACTGGATGTGCATCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52583.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis