Browse Element(s) Details


Os.52597.1.S1_at

Description gb:AK068257.1
DB_XREF= gi:32978275
TID=Os.52597.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52597 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013148O14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013148O14, full insert sequence.
FL= gb:AK068257.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5954011/11Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g59510Os.9618.1.S1_at11/114+35163816..35171348PHD finger transcription factor, putative, expressed
LOC_Os04g59510OsAffx.14481.1.S1_at9/114+35163816..35171348PHD finger transcription factor, putative, expressed
LOC_Os04g59510Os.28544.1.S1_at1/114+35163816..35171348PHD finger transcription factor, putative, expressed
LOC_Os04g59520Os.4621.1.S1_at11/114+35179775..35183477C2 domain-containing protein, putative, expressed
LOC_Os04g59520Os.4621.1.S1_s_at11/114+35179775..35183477C2 domain-containing protein, putative, expressed
LOC_Os04g59520OsAffx.26668.1.S1_at11/114+35179775..35183477C2 domain-containing protein, putative, expressed
LOC_Os04g59520OsAffx.30059.2.S1_x_at1/114+35179775..35183477C2 domain-containing protein, putative, expressed
LOC_Os04g59530Os.47463.1.S1_x_at2/114+35185197..35186475transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g59530Os.14491.2.S1_x_at2/114+35185197..35186475transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g59540Os.52597.1.S1_at11/114+35194225..35199766Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os04g59550Os.6715.1.S1_at11/114+35199872..35202466glucose-6-phosphate/phosphate translocator, putative, expressed
LOC_Os04g59560Os.49141.1.S1_at10/114+35203978..35207760CAP-Gly domain containing protein, expressed
LOC_Os04g59570Os.5577.2.S1_a_at11/114+35207902..35210490expressed protein
LOC_Os04g59570Os.5577.2.S1_at11/114+35207902..35210490expressed protein
LOC_Os04g59580Os.48291.1.S1_at11/114+35211264..35213719Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g59590Os.53076.1.S1_at11/114+35215925..35220062dehydration-responsive protein, putative, expressed
LOC_Os04g59600Os.50410.1.S1_at11/114+35220262..35224690pentatricopeptide, putative, expressed
LOC_Os04g59600Os.50410.2.S1_at11/114+35220262..35224690pentatricopeptide, putative, expressed
LOC_Os04g59600Os.50410.1.S1_x_at11/114+35220262..35224690pentatricopeptide, putative, expressed
LOC_Os04g59600Os.50410.1.S2_at11/114+35220262..35224690pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0008270molecular_functionzinc ion binding
GO:0016308molecular_function1-phosphatidylinositol-4-phosphate 5-kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52597.1.S1_at--1059--10811Chr04:35199130..35199154 (25 bp)
TTGTCGATGATATGCGTGTTTCCCC
LOC_Os04g59540
Os.52597.1.S1_at--220--4671Chr04:35199143..35199167 (25 bp)
GCGTGTTTCCCCTATATATGTTGGT
LOC_Os04g59540
Os.52597.1.S1_at--481--5451Chr04:35199172..35199196 (25 bp)
GAACGAAACATCTCTTGCAGCGGGC
LOC_Os04g59540
Os.52597.1.S1_at--449--2191Chr04:35199208..35199320 (25 bp)
ACACAGCTTTTCTCACTTCAATTAA
LOC_Os04g59540
Os.52597.1.S1_at--1030--10091Chr04:35199324..35199348 (25 bp)
TATGGACTACTCGTTACTGGTGGGA
LOC_Os04g59540
Os.52597.1.S1_at--207--7371Chr04:35199433..35199457 (25 bp)
GTGAAAACTTCTTTGGTAGTGCCAA
LOC_Os04g59540
Os.52597.1.S1_at--483--631Chr04:35199461..35199485 (25 bp)
ATGCTTCACCAACAGTAATCTCACC
LOC_Os04g59540
Os.52597.1.S1_at--585--8451Chr04:35199519..35199543 (25 bp)
GGCCAAGTATTTCCTGACAGTTCCA
LOC_Os04g59540
Os.52597.1.S1_at--261--3851Chr04:35199580..35199604 (25 bp)
CTGCAAATCCTGTCCATTATCTGTT
LOC_Os04g59540
Os.52597.1.S1_at--1084--5171Chr04:35199621..35199645 (25 bp)
GAATGGAACGCTCACTTGTTTAAAG
LOC_Os04g59540
Os.52597.1.S1_at--787--6371Chr04:35199714..35199738 (25 bp)
GATCCCTCACATGTATTGGTTACTG
LOC_Os04g59540
Target Sequence 
TTGTCGATGATATGCGTGTTTCCCCTATATATGTTGGTGGAAGAACGAAACATCTCTTGCAGCGGGCAATCTGGAACGAC
ACAGCTTTTCTCACTTCAATTAATGTTATGGACTACTCGTTACTGGTGGGAGTGGACAAAGAAAAGCATGAGTTTGTATT
TGGCATCATAGATTACCTAAGGCAGTATACATGGGACAAGCAACTGGAGACGTGGGTGAAAACTTCTTTGGTAGTGCCAA
AGAATGCTTCACCAACAGTAATCTCACCCAAAGAGTACAAGAAGAGGTTTAGGAAGTTCATGGCCAAGTATTTCCTGACA
GTTCCAGACGATTGGAGTACATAGATAGAAACGTCTGGGGTCCTGCAAATCCTGTCCATTATCTGTTTTGTTTGTACACA
GTAGAATGGAACGCTCACTTGTTTAAAGTTCTCCAATAGTTTGCAGTTTTAAGGCAAAATTTTGGAGCGAGGCCCAAATA
CATGATCAAAATCATTGATCCCTCACATGTATTGGTTACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52597.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis