Browse Element(s) Details


Os.52609.1.S1_at

Description gb:AK068295.1
DB_XREF= gi:32978313
TID=Os.52609.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52609 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013150D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013150D12, full insert sequence.
FL= gb:AK068295.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g434602/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g198402/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g212802/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g195301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g450301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g351401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g274901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g122101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g447301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g123701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g378401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g321201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g233201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g247901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g147901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g216401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g181401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g168501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g145801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g034201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g021101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g201701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g372301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g047901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g206101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g020601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g216401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g220301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g538901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g193301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g585701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g553201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g220301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g484401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g392501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g222201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g291501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g202501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g221101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g208101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g316401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g384201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g336901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g295301/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g43420Os.53698.1.S1_at8/1111+25710912..25713973NB-ARC domain containing protein, expressed
LOC_Os11g43430Os.14491.2.S1_x_at1/1111+25718811..25723864transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g43430Os.47463.1.S1_x_at1/1111+25718811..25723864transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g43440NANA11+25727431..25728051hypothetical protein
LOC_Os11g43450NANA11+25729552..25732285transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g43460OsAffx.447.1.S1_at7/1111+25735696..25740238retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g43460Os.52609.1.S1_at2/1111+25735696..25740238retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g43460OsAffx.22947.2.S1_x_at1/1111+25735696..25740238retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g43470NANA11+25743286..25744374transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g43480OsAffx.31457.1.S1_at11/1111+25747182..25750328hypothetical protein
LOC_Os11g43490NANA11+25751955..25752653hypothetical protein
LOC_Os11g43500OsAffx.31458.1.S1_at11/1111+25753361..25754635Leucine Rich Repeat family protein
LOC_Os11g43510Os.33665.1.S1_at11/1111+25756948..25760360Lipase family protein, expressed
LOC_Os11g43520Os.55402.1.S1_at11/1111+25763193..25763800Glutaredoxin-like family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52609.1.S1_at--160--7599Chr10:4657916..4657935 (20 bp)
GGGCTAAATTTCTAGGCGTGTGTAC
NONE
Os.52609.1.S1_at--615--8171Chr09:12574760..12574784 (25 bp)
TGTGTACCCGACGACAAAAAACTGA
NONE
Os.52609.1.S1_at--1010--9637Chr11:25738966..25738986 (21 bp)
TCAGTATTCAATTCATCCCGGCACT
LOC_Os11g43460
Os.52609.1.S1_at--35--3131Chr09:12574825..12574849 (25 bp)
AATTCATCCCGGCACTACCAAAATG
NONE
Os.52609.1.S1_at--132--2351Chr09:12574940..12574964 (25 bp)
AAAGCAGAACATCAGCGACCCGCTG
NONE
Os.52609.1.S1_at--452--45343Chr12:20311340..20311363 (24 bp)
GCCCCTTCAGATCCCGGAATGGAAA
LOC_Os12g33690
Os.52609.1.S1_at--1137--7931Chr09:12575028..12575052 (25 bp)
GGATTTCCTAGAAAACTTCCACAAT
NONE
Os.52609.1.S1_at--908--6111Chr09:12575076..12575100 (25 bp)
GATTTGTAACCATCGAATCGTTTCG
NONE
Os.52609.1.S1_at--975--1411Chr09:12575137..12575161 (25 bp)
AGAAATTTTCACACATGCCATGCGT
NONE
Os.52609.1.S1_at--144--2111Chr09:12575149..12575173 (25 bp)
ACATGCCATGCGTAAGATCCCAGGG
NONE
Os.52609.1.S1_at--142--7591Chr09:12575171..12575195 (25 bp)
GGGCTATCTAACCAAACCATCGTTG
NONE
Target Sequence 
GGGCTAAATTTCTAGGCGTGTGTACCCGACGACAAAAAACTGAAGGATCTGATACTCACCGAAGCTCATCAAACTCAGTA
TTCAATTCATCCCGGCACTACCAAAATGTACCAGGACCTCAAAGAGAAATTCTGGTGGGCCAGCATGAGAAGAGAAATAG
CCGAATTCGTCGCACTCTGCGATGTTTGTCAACGAGTCAAAGCAGAACATCAGCGACCCGCTGGACTGCTCTAGCCCCTT
CAGATCCCGGAATGGAAATGGGAAGAAATCGGAATGTTTACCCAACGGATTTCCTAGAAAACTTCCACAATTTTTTTTGC
CCCCAAAACTTTCAGATTTGTAACCATCGAATCGTTTCGAGATTTGTGCATGAAGAGAAAAAAATTGCTAGATAAAGAAA
TTTTCACACATGCCATGCGTAAGATCCCAGGGCTATCTAACCAAACCATCGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52609.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis