Browse Element(s) Details


Os.52619.1.S1_at

Description gb:AK068339.1
DB_XREF= gi:32978357
TID=Os.52619.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52619 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013148N01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013148N01, full insert sequence.
FL= gb:AK068339.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1375011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g13710NANA11+7539381..7540430hypothetical protein
LOC_Os11g13720Os.57334.1.S1_at11/1111+7547441..7548132expressed protein
LOC_Os11g13730Os.47463.1.S1_x_at5/1111+7550033..7554885transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g13730Os.14491.2.S1_x_at4/1111+7550033..7554885transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g13740Os.27037.1.A1_at1/1111+7556334..7562086transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g13740Os.34537.1.S1_at1/1111+7556334..7562086transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g13750Os.52619.1.S1_at11/1111+7563442..7564248expressed protein
LOC_Os11g13760OsAffx.18833.1.S1_at11/1111+7568708..7568908hypothetical protein
LOC_Os11g13770OsAffx.30959.1.S1_at11/1111+7571321..7571875hypothetical protein
LOC_Os11g13780NANA11+7573374..7574932retrotransposon protein, putative, unclassified
LOC_Os11g13790NANA11+7575645..7577337retrotransposon protein, putative, unclassified
LOC_Os11g13800Os.19345.1.S1_at11/1111+7579887..7583823expressed protein
LOC_Os11g13800Os.51061.1.S1_at1/1111+7579887..7583823expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52619.1.S1_at--648--4691Chr11:7563935..7563959 (25 bp)
GCGGCGAAGAAGTACGTGCTCCACT
LOC_Os11g13750
Os.52619.1.S1_at--845--1451Chr11:7563928..7563952 (25 bp)
AGAAGTACGTGCTCCACTACAGCAG
LOC_Os11g13750
Os.52619.1.S1_at--347--6211Chr11:7563842..7563866 (25 bp)
GAGGCGTTCGCGTGGTTCCGCATCT
LOC_Os11g13750
Os.52619.1.S1_at--813--8571Chr11:7563830..7563854 (25 bp)
TGGTTCCGCATCTCGGAGGTCGACG
LOC_Os11g13750
Os.52619.1.S1_at--111--4491Chr11:7563711..7563735 (25 bp)
GCCGGCGATCGATTGATTCATCATT
LOC_Os11g13750
Os.52619.1.S1_at--107--3471Chr11:7563667..7563691 (25 bp)
CAGTGTTGTTTATTTGATGTGTTCA
LOC_Os11g13750
Os.52619.1.S1_at--1048--3131Chr11:7563629..7563653 (25 bp)
AATTACGTCATTTTGTTACTGTCAC
LOC_Os11g13750
Os.52619.1.S1_at--866--10411Chr11:7563614..7563638 (25 bp)
TTACTGTCACGGGAGGTACTGCGAG
LOC_Os11g13750
Os.52619.1.S1_at--142--9131Chr11:7563595..7563619 (25 bp)
TGCGAGGTACCAACGAGATTAATTC
LOC_Os11g13750
Os.52619.1.S1_at--962--6471Chr11:7563568..7563592 (25 bp)
GATACATACGTCGTGGTACCTCCTT
LOC_Os11g13750
Os.52619.1.S1_at--265--7851Chr11:7563554..7563578 (25 bp)
GGTACCTCCTTAGGAATTGTCAGAA
LOC_Os11g13750
Target Sequence 
GCGGCGAAGAAGTACGTGCTCCACTACAGCAGCCGCGTCGCCGGCCAGATCGCCACCGGCTCCATCACCTCCCTGGAGGG
GGTGAAGGTGAAGGAGGCGTTCGCGTGGTTCCGCATCTCGGAGGTCGACGTCGACGGCGACCAGATCAAGCTCCACGTCG
GCCTCTACACCGCCACCGTCGCCGCCGACCAGCTCGCCGTCAGCCCCCAGTGCAACTGACGGCCGCCGGCGATCGATTGA
TTCATCATTTCTCTTAATTAATTTGTTGCAGTGTTGTTTATTTGATGTGTTCAAGTAAGAGTAATCAATTACGTCATTTT
GTTACTGTCACGGGAGGTACTGCGAGGTACCAACGAGATTAATTCACGATACATACGTCGTGGTACCTCCTTAGGAATTG
TCAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52619.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis