Browse Element(s) Details


Os.52634.2.S1_x_at

Description gb:AK073998.1
DB_XREF= gi:32984021
TID=Os.52634.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52634 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033071H21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033071H21, full insert sequence.
FL= gb:AK073998.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1563911/11expressed protein
LOC_Os09g100541/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15590OsAffx.30125.1.S1_at11/119+9517483..9523582F-box domain containing protein, expressed
LOC_Os09g15590OsAffx.8513.1.S1_s_at1/119+9517483..9523582F-box domain containing protein, expressed
LOC_Os09g15600OsAffx.13016.2.S1_at10/119+9525904..9527944transposon protein, putative, unclassified
LOC_Os09g15610Os.14491.2.S1_x_at4/119+9529692..9532617transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g15610Os.47463.1.S1_x_at4/119+9529692..9532617transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g15620NANA9+9532863..9534256transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g15630Os.27037.1.A1_at1/119+9535282..9538504transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g15639Os.52634.2.S1_x_at11/119+9543293..9545477expressed protein
LOC_Os09g15639Os.36453.1.S1_at2/119+9543293..9545477expressed protein
LOC_Os09g15650NANA9+9549098..9550318hypothetical protein
LOC_Os09g15660OsAffx.17721.1.S1_at11/119+9553910..9555217hypothetical protein
LOC_Os09g15670Os.9022.1.S1_at11/119+9566470..9567889Protein phosphatase 2C, putative, expressed
LOC_Os09g15680Os.32340.1.S1_at11/119+9569652..9570654hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0006952biological_processdefense response
GO:0009598biological_processdetection of pathogenic bacteria
GO:0009626biological_processhypersensitive response
GO:0005886cellular_componentplasma membrane
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52634.2.S1_x_at--120--8191Chr09:9544962..9544986 (25 bp)
GGAAGACACTGCACCGTCGGCGGCA
LOC_Os09g15639
Os.52634.2.S1_x_at--244--10231Chr09:9545087..9545111 (25 bp)
TTTGTCGGAGATGTCGTCGACCACC
LOC_Os09g15639
Os.52634.2.S1_x_at--163--4271Chr09:9545139..9545163 (25 bp)
CCGGCAGCAACAAGACGGTCTTCTT
LOC_Os09g15639
Os.52634.2.S1_x_at--834--7311Chr09:9545177..9545201 (25 bp)
GTGCTCCGGTTCTTGCAAGTTGCGA
LOC_Os09g15639
Os.52634.2.S1_x_at--1073--2811Chr09:9545193..9545217 (25 bp)
AAGTTGCGACGGCTCATTCTCGGAT
LOC_Os09g15639
Os.52634.2.S1_x_at--764--3591Chr09:9545207..9545231 (25 bp)
CATTCTCGGATCCATTAACCTTGAT
LOC_Os09g15639
Os.52634.2.S1_x_at--647--9571Chr09:9545234..9545258 (25 bp)
TCTTCTCGCGTTTGTTTATGGCTTG
LOC_Os09g15639
Os.52634.2.S1_x_at--2--10031Chr09:9545262..9545286 (25 bp)
TAGAGTATACCATATCGTGCATCAT
LOC_Os09g15639
Os.52634.2.S1_x_at--1117--7831Chr09:9545287..9545311 (25 bp)
GGTAGTATTTTATACTCACTCCGTT
LOC_Os09g15639
Os.52634.2.S1_x_at--927--45710Chr09:9545369..9545393 (25 bp)
GCGCATTCGCGTGGGCATATATTTT
LOC_Os09g15639
Os.52634.2.S1_x_at--304--6951Chr09:9545440..9545464 (25 bp)
GTAGAACACCTCTCATGCTTCAAAA
LOC_Os09g15639
Target Sequence 
GGAAGACACTGCACCGTCGGCGGCATCAACGACGACGACGCGGCGCTAGCGCTTGCAGACGGACGCGGCGCGGATGAGGC
AGGCGGCGGATCGGAGTGGAGGCGCAGCAGGACGAGCTCGAGGACTTTGTCGGAGATGTCGTCGACCACCCACGTAGCCA
CGTAGGCCTCGCCGTCGCCGGCAGCAACAAGACGGTCTTCTTCCTCCGCGCCGCCGTGCTCCGGTTCTTGCAAGTTGCGA
CGGCTCATTCTCGGATCCATTAACCTTGATCTTCTTCTCGCGTTTGTTTATGGCTTGTTATAGAGTATACCATATCGTGC
ATCATGGTAGTATTTTATACTCACTCCGTTTCAGGTTATAAGACTTTCTAGCATTACCCACGTTCATATGAACTAGGAAG
GTAGTCCGCGCATTCGCGTGGGCATATATTTTAAGATGTGTTTGAGATATTTACAGTTATAAGGATGGAATATTAACTGT
AGAACACCTCTCATGCTTCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52634.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis