Browse Element(s) Details


Os.52647.1.S1_at

Description gb:AK068519.1
DB_XREF= gi:32978537
TID=Os.52647.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52647 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013156O10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013156O10, full insert sequence.
FL= gb:AK068519.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5371011/11Aldose 1-epimerase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53660Os.46743.3.S1_a_at11/113+30714994..30724355myosin family protein, putative, expressed
LOC_Os03g53670Os.9822.2.S1_a_at11/113+30728128..30732240YT521-B-like family protein, expressed
LOC_Os03g53680NANA3+30738028..30738258hypothetical protein
LOC_Os03g53690Os.55539.1.S1_at11/113+30738832..30739853NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g53700Os.14952.1.A1_at9/113+30742024..30747217PHD-finger family protein, expressed
LOC_Os03g53710Os.52647.1.S1_at11/113+30746891..30748683Aldose 1-epimerase family protein, expressed
LOC_Os03g53720Os.26432.1.S1_at11/113+30753769..30757824protein kinase family protein, putative, expressed
LOC_Os03g53730Os.56988.1.S1_at11/113+30758057..30759117flavodoxin family protein, expressed
LOC_Os03g53740Os.49691.1.S1_at11/113+30759437..30760399expressed protein
LOC_Os03g53750Os.10141.1.S1_at11/113+30760719..30765124Narf, putative, expressed
LOC_Os03g53760OsAffx.25706.1.S1_x_at11/113+30766042..30772826Helicase associated domain family protein, expressed
LOC_Os03g53760Os.47539.1.S1_at11/113+30766042..30772826Helicase associated domain family protein, expressed
LOC_Os03g53760Os.47539.1.S1_s_at11/113+30766042..30772826Helicase associated domain family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52647.1.S1_at--737--1071Chr03:30747808..30747832 (25 bp)
AGGGCTCCGACTACCGCGCCATAGA
LOC_Os03g53710
Os.52647.1.S1_at--930--271Chr03:30747788..30747812 (25 bp)
ATAGATCCCGTGCTCTCGGAGTTCG
LOC_Os03g53710
Os.52647.1.S1_at--101--4271Chr03:30747752..30747776 (25 bp)
CCGGACTTCATGTCGCGGTCGTCGT
LOC_Os03g53710
Os.52647.1.S1_at--631--6291Chr03:30747606..30747630 (25 bp)
GATGACCGAGGAGATGTGCCGCATC
LOC_Os03g53710
Os.52647.1.S1_at--680--6031Chr03:30747596..30747620 (25 bp)
GAGATGTGCCGCATCTACAGCCACG
LOC_Os03g53710
Os.52647.1.S1_at--673--6191Chr03:30747190..30747214 (25 bp)
GAGGAACTCCATTTGCGTGCAGCGG
LOC_Os03g53710
Os.52647.1.S1_at--1025--9371Chr03:30747158..30747182 (25 bp)
TCGAGGAGGTGTACGTGTTCAGCCC
LOC_Os03g53710
Os.52647.1.S1_at--896--8571Chr03:30747117..30747141 (25 bp)
TGGTACGGGAAGTACGCCTACGTGT
LOC_Os03g53710
Os.52647.1.S1_at--940--2591Chr03:30747018..30747042 (25 bp)
AACCCAAACCTCTAGATAGACAAGA
LOC_Os03g53710
Os.52647.1.S1_at--41--2751Chr03:30746992..30747016 (25 bp)
AAGACAGGCTAGCTGGCGACTCAAT
LOC_Os03g53710
Os.52647.1.S1_at--744--8591Chr03:30746947..30746971 (25 bp)
TGGTCATTGTACATGTTGGCTCACA
LOC_Os03g53710
Target Sequence 
AGGGCTCCGACTACCGCGCCATAGATCCCGTGCTCTCGGAGTTCGCCATCGTGCCCCCGGACTTCATGTCGCGGTCGTCG
TCGGCGACGACGCTCGCGCGGCGCTGGGCCACCAAGGGGTTCGACGCGGTCCTCTCCGGCGGCGGCGGCGGCGGCGCGGG
GGCGCAAGAGGCCGACGGCGAGGAGGACGACGACTACAAGCGGATGACCGAGGAGATGTGCCGCATCTACAGCCACGCCC
CCCGCCAATTCACCATCATCGACAGGGGGAGGAGGAACTCCATTTGCGTGCAGCGGAGAGGGTTCGAGGAGGTGTACGTG
TTCAGCCCGGGGTCAAAGTACCAGTGGTACGGGAAGTACGCCTACGTGTGCGTGGGGCCCGCCATGCTGGAGCCCATCGT
GCTGTCACCTGGGGCCACATGGTCAGGGGCTCAGTACCTGCGCAACCCAAACCTCTAGATAGACAAGACAAGACAGGCTA
GCTGGCGACTCAATGCTGCTGGGGAACAAAACAATGGTCATTGTACATGTTGGCTCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52647.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis