Browse Element(s) Details


Os.52657.1.S1_at

Description gb:AK068596.1
DB_XREF= gi:32978613
TID=Os.52657.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52657 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013154C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013154C07, full insert sequence.
FL= gb:AK068596.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4259011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42520Os.7457.1.S1_a_at11/114+24946595..24951654Adenine phosphoribosyltransferase 2, putative, expressed
LOC_Os04g42530OsAffx.4057.1.S1_at11/114+24955169..24955534hypothetical protein
LOC_Os04g42540Os.5770.1.S1_at11/114+24955687..24956651expressed protein
LOC_Os04g42550OsAffx.26431.1.S1_at11/114+24959247..24959735hypothetical protein
LOC_Os04g42560OsAffx.28660.1.S1_at1/114+24960766..24961059hypothetical protein
LOC_Os04g42560OsAffx.28660.1.S1_x_at1/114+24960766..24961059hypothetical protein
LOC_Os04g42570OsAffx.4058.1.S1_x_at11/114+24963397..24967270AP2 domain containing protein
LOC_Os04g42570OsAffx.23957.2.S1_x_at1/114+24963397..24967270AP2 domain containing protein
LOC_Os04g42570Os.55217.1.S1_at1/114+24963397..24967270AP2 domain containing protein
LOC_Os04g42580Os.7025.1.S1_s_at11/114+24968781..24972481carboxyvinyl-carboxyphosphonate phosphorylmutase, putative, expressed
LOC_Os04g42590Os.52657.1.S1_at11/114+24972383..24973850expressed protein
LOC_Os04g42590OsAffx.23890.4.S1_x_at1/114+24972383..24973850expressed protein
LOC_Os04g42600Os.38233.1.S2_at11/114+24974933..24982124Polyadenylate-binding protein 2, putative, expressed
LOC_Os04g42600Os.38233.1.S1_s_at11/114+24974933..24982124Polyadenylate-binding protein 2, putative, expressed
LOC_Os04g42600Os.38233.1.S2_s_at11/114+24974933..24982124Polyadenylate-binding protein 2, putative, expressed
LOC_Os04g42610Os.8398.1.S1_a_at11/114+24988714..24994819expressed protein
LOC_Os04g42620Os.15713.1.S1_a_at11/114+24998777..25000582Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52657.1.S1_at--1139--6431Chr04:24972769..24972793 (25 bp)
GATCACAGATGCCATGAAGGACAGC
LOC_Os04g42590
Os.52657.1.S1_at--802--7691Chr04:24972637..24972661 (25 bp)
GGGTCTCTTCGATATAGCATGGCAG
LOC_Os04g42590
Os.52657.1.S1_at--856--5011Chr04:24972613..24972637 (25 bp)
GCAGAAGCTAGCGTAGGGTAACCAA
LOC_Os04g42590
Os.52657.1.S1_at--1143--5671Chr04:24972535..24972559 (25 bp)
GACTTGTAGTAATCCTTGCACTGCT
LOC_Os04g42590
Os.52657.1.S1_at--608--571Chr04:24972524..24972548 (25 bp)
ATCCTTGCACTGCTAGTGTCATATT
LOC_Os04g42590
Os.52657.1.S1_at--331--7451Chr04:24972509..24972533 (25 bp)
GTGTCATATTGTGAACTGTCGCATA
LOC_Os04g42590
Os.52657.1.S1_at--142--5471Chr04:24972497..24972521 (25 bp)
GAACTGTCGCATACCGGATTGTAGA
LOC_Os04g42590
Os.52657.1.S1_at--54--2431Chr04:24972468..24972492 (25 bp)
AAAACCTGGGTACATCACAACGCAT
LOC_Os04g42590
Os.52657.1.S1_at--539--4991Chr04:24972447..24972471 (25 bp)
GCATGAGCTGTTCACTGCTTCAAAA
LOC_Os04g42590
Os.52657.1.S1_at--1118--4971Chr04:24972400..24972424 (25 bp)
GCATGCAAACATTTCAAACCTCCTG
LOC_Os04g42590
Os.52657.1.S1_at--453--2371Chr04:24972385..24972409 (25 bp)
AAACCTCCTGAGAATGCTTTTTATT
LOC_Os04g42590
Target Sequence 
GATCACAGATGCCATGAAGGACAGCACGGAGATCGTGAAGGATGAGGACCAGGAGAGAGGAGGCAGCGAGAGGGAAGAAG
AGGAGACCTTCGCCATGGCCCGCACGGCGGAGAGCAGGGAGGAAGCATTGCTGGGTCTCTTCGATATAGCATGGCAGCAG
AAGCTAGCGTAGGGTAACCAAAGGGCAAAGGTGTAACCATTGGACACTGTATAGTATAGTGTTGTGAAGTTGTAGACTTG
TAGTAATCCTTGCACTGCTAGTGTCATATTGTGAACTGTCGCATACCGGATTGTAGAGAATAAAACCTGGGTACATCACA
ACGCATGAGCTGTTCACTGCTTCAAAAATGTAAATATCAGCAGATAGAAGCATGCAAACATTTCAAACCTCCTGAGAATG
CTTTTTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52657.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis