Browse Element(s) Details


Os.52671.1.S1_at

Description gb:AK068708.1
DB_XREF= gi:32978725
TID=Os.52671.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52671 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013160K24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013160K24, full insert sequence.
FL= gb:AK068708.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g311108/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g31050NANA7+18381962..18385354retrotransposon protein, putative, unclassified
LOC_Os07g31060NANA7+18386256..18389547retrotransposon protein, putative, unclassified
LOC_Os07g31070OsAffx.28688.1.S1_at11/117+18392051..18397365expressed protein
LOC_Os07g31080NANA7+18400897..18401694transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g31090OsAffx.20823.2.S1_x_at1/117+18403411..18403887retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g31100NANA7+18404732..18405753transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g31110Os.52671.1.S1_at8/117+18406243..18412376transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g31110Os.14491.2.S1_x_at4/117+18406243..18412376transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g31110Os.47463.1.S1_x_at4/117+18406243..18412376transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g31130Os.52899.1.S1_at11/117+18414610..18418724Protein kinase domain containing protein, expressed
LOC_Os07g31140Os.8147.1.S1_a_at2/117+18426212..184295853-oxo-5-alpha-steroid 4-dehydrogenase family protein, putative
LOC_Os07g31150OsAffx.16503.1.S1_at11/117+18434258..18435116hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52671.1.S1_at--125--2871Chr07:18411944..18411968 (25 bp)
AAGTGGTGCAAGTTAATCAGGACAG
LOC_Os07g31110
Os.52671.1.S1_at--480--9631Chr07:18411960..18411984 (25 bp)
TCAGGACAGCAAAGACGCTTAGTCT
LOC_Os07g31110
Os.52671.1.S1_at--268--4931Chr07:18412059..18412083 (25 bp)
GCTTGATTGGAGTTATCCTGCTCCT
LOC_Os07g31110
Os.52671.1.S1_at--109--8291Chr07:18412234..18412258 (25 bp)
GGCATATGGTTTCTATCGTAACGGT
LOC_Os07g31110
Os.52671.1.S1_at--343--2551Chr07:18412263..18412287 (25 bp)
AACTCCATATTGATCTGTTCTTTAG
LOC_Os07g31110
Os.52671.1.S1_at--401--291Chr07:18412299..18412323 (25 bp)
ATAGACATTTGCATGACATCTGGAA
LOC_Os07g31110
Os.52671.1.S1_at--675--5671Chr07:18412313..18412337 (25 bp)
GACATCTGGAATGGTTATCTTCTTT
LOC_Os07g31110
Os.52671.1.S1_at--134--10173Chr12:16100454..16100478 (24 bp)
TATCTTCTTTGTTGAATGTTCTTTC
NONE
Os.52671.1.S1_at--839--5931Chr07:18412432..18412456 (25 bp)
GAGCAGATCTATACTCTATGTACTG
NONE
Os.52671.1.S1_at--1042--5751Chr07:18412474..18412498 (25 bp)
GACGATGTAGTATTTCCTTTTATAA
NONE
Os.52671.1.S1_at--454--9752Chr07:18412496..18412520 (25 bp)
TAATACAATTTGTCACGCTTCATTT
NONE
Target Sequence 
AAGTGGTGCAAGTTAATCAGGACAGCAAAGACGCTTAGTCTTATGAAGAAATGTCACATATACAGGAAAGGATGAGATTG
GCCAAAATGTTTTTTTAGTCTTCTGATTTGCAGATGCTTGATTGGAGTTATCCTGCTCCTGCCACAAACAGGAAATGGTA
AGAACTAAGTAGAGTGTATACTCACATGCATATATATCATTGAGTTGGGTGATTCTAAATTAATATTTGGCACATTGTAG
AAAATATTGGTTTCAAGCTATTTTTTTTATCAAGCATACATGACCTAAAAGGCATATGGTTTCTATCGTAACGGTTGATA
ACTCCATATTGATCTGTTCTTTAGAAATTCATGAAATAGACATTTGCATGACATCTGGAATGGTTATCTTCTTTGTTGAA
TGTTCTTTCAAGAACTTGCACCTTTTTGTTTAATCTTGTAAATTTGATGTGTAATTGAGCTTGTAGGGTGAGAGAATCAA
GTGTGATTGAGCAGATCTATACTCTATGTACTGAGATTGTGTAGAGTAAAGACGATGTAGTATTTCCTTTTATAATACAA
TTTGTCACGCTTCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52671.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis