Browse Element(s) Details


Os.52681.1.S1_at

Description gb:AK068745.1
DB_XREF= gi:32978768
TID=Os.52681.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52681 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013164J17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013164J17, full insert sequence.
FL= gb:AK068745.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0839011/11Ser/Thr protein phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08360NANA6+4061445..4062329UPF0326 protein hag1, putative, expressed
LOC_Os06g08370OsAffx.23250.2.S1_x_at3/116+4063784..4064226hypothetical protein
LOC_Os06g08380OsAffx.27509.1.S1_at11/116+4065765..4082812Beta-1,3-glucan synthase, putative, expressed
LOC_Os06g08380OsAffx.27509.1.S2_s_at11/116+4065765..4082812Beta-1,3-glucan synthase, putative, expressed
LOC_Os06g08380OsAffx.27509.1.S2_at9/116+4065765..4082812Beta-1,3-glucan synthase, putative, expressed
LOC_Os06g08390Os.52681.1.S1_at11/116+4086967..4091107Ser/Thr protein phosphatase family protein, expressed
LOC_Os06g08390Os.56071.1.S1_at8/116+4086967..4091107Ser/Thr protein phosphatase family protein, expressed
LOC_Os06g08400Os.15350.1.S1_x_at11/116+4092232..4099891LIM domain-containing protein, putative, expressed
LOC_Os06g08400Os.21811.1.S1_at1/116+4092232..4099891LIM domain-containing protein, putative, expressed
LOC_Os06g08410Os.47463.1.S1_x_at5/116+4105714..4111037transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g08410Os.14491.2.S1_x_at5/116+4105714..4111037transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g08420NANA6+4112423..4115755transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52681.1.S1_at--287--8071Chr06:4090572..4090596 (25 bp)
GGAGCAAGCCATATCTGATCTGCAA
LOC_Os06g08390
Os.52681.1.S1_at--67--5551Chr06:4090600..4090624 (25 bp)
GAAACCGGAGTTTCGATACCGCTGG
LOC_Os06g08390
Os.52681.1.S1_at--795--7191Chr06:4090624..4090648 (25 bp)
GTCGTGTTCGGTCACATGCACAAGA
LOC_Os06g08390
Os.52681.1.S1_at--563--71Chr06:4090681..4090705 (25 bp)
ATTGCCTTTGGAGCTAACCGGACTA
LOC_Os06g08390
Os.52681.1.S1_at--274--5691Chr06:4090701..4090725 (25 bp)
GACTATATATCTGAACGGCGCCGTT
LOC_Os06g08390
Os.52681.1.S1_at--765--1671Chr06:4090760..4090784 (25 bp)
AGCCTGCAATCTCCACAAGCGAAAA
LOC_Os06g08390
Os.52681.1.S1_at--971--951Chr06:4090806..4090830 (25 bp)
AGGACTGATGGTTCCGACATCGCGG
LOC_Os06g08390
Os.52681.1.S1_at--214--4631Chr06:4090831..4090855 (25 bp)
GCGTTCACCATTGTTGATCTCTTTG
LOC_Os06g08390
Os.52681.1.S1_at--928--5511Chr06:4090869..4090893 (25 bp)
GAAAATCTCCGAGGTCTGGGTGACG
LOC_Os06g08390
Os.52681.1.S1_at--999--7031Chr06:4090935..4090959 (25 bp)
GTACAAGCAACCACGTGAGCACATA
LOC_Os06g08390
Os.52681.1.S1_at--55--5951Chr06:4090951..4090975 (25 bp)
GAGCACATATGACTTCCACAAACTG
LOC_Os06g08390
Target Sequence 
GGAGCAAGCCATATCTGATCTGCAAAGAGAAACCGGAGTTTCGATACCGCTGGTCGTGTTCGGTCACATGCACAAGAGCC
TCGCCTACGGGAGAGGCCTTCGGAAGATGATTGCCTTTGGAGCTAACCGGACTATATATCTGAACGGCGCCGTTGTGCCT
AGAGTGAATCATGCGCAATCAAGCAGGCAGCCTGCAATCTCCACAAGCGAAAAGACTGGGCTCGAAGGATTAACAGGACT
GATGGTTCCGACATCGCGGGCGTTCACCATTGTTGATCTCTTTGAAGGCGCCGTTGAGAAAATCTCCGAGGTCTGGGTGA
CGGTGGGTGNTGCCAGGACGGAGCTTGAGCAGGAATTAGTCTTGTACAAGCAACCACGTGAGCACATATGACTTCCACAA
ACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52681.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis