Browse Element(s) Details


Os.52699.1.S1_at

Description gb:AK068809.1
DB_XREF= gi:32978834
TID=Os.52699.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52699 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013160F13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013160F13, full insert sequence.
FL= gb:AK068809.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5542011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55370OsAffx.26612.1.S1_at11/114+32721792..32723214hypothetical protein
LOC_Os04g55380OsAffx.14426.1.S1_at11/114+32727889..32728238hypothetical protein
LOC_Os04g55390OsAffx.26613.1.S1_at11/114+32729389..32730994hypothetical protein
LOC_Os04g55400OsAffx.14427.1.S1_at11/114+32733278..32734131hypothetical protein
LOC_Os04g55410Os.17903.1.S1_at11/114+32736641..32740875Glycerol kinase, putative, expressed
LOC_Os04g55410Os.54646.1.S1_at1/114+32736641..32740875Glycerol kinase, putative, expressed
LOC_Os04g55410Os.28089.1.S2_at1/114+32736641..32740875Glycerol kinase, putative, expressed
LOC_Os04g55420Os.52699.1.S1_at11/114+32744512..32747933Leucine Rich Repeat family protein, expressed
LOC_Os04g55430Os.20602.2.S1_x_at10/114+32749285..32751465hAT family dimerisation domain containing protein
LOC_Os04g55440Os.57007.1.S1_at11/114+32755775..32758622Leucine Rich Repeat family protein, expressed
LOC_Os04g55450Os.38395.3.S1_x_at11/114+32760827..32767456transposon protein, putative, Mutator sub-class
LOC_Os04g55450Os.38395.4.S1_x_at9/114+32760827..32767456transposon protein, putative, Mutator sub-class
LOC_Os04g55450Os.38395.2.S1_x_at9/114+32760827..32767456transposon protein, putative, Mutator sub-class
LOC_Os04g55450Os.38395.5.S1_at3/114+32760827..32767456transposon protein, putative, Mutator sub-class
LOC_Os04g55450Os.38395.1.S1_at1/114+32760827..32767456transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52699.1.S1_at--972--8071Chr04:32747343..32747367 (25 bp)
GGACCTTTCCCACAATGAACTGAGT
LOC_Os04g55420
Os.52699.1.S1_at--1117--6591Chr04:32747369..32747393 (25 bp)
GATTGATTCCATGGCAGCTGACCAA
LOC_Os04g55420
Os.52699.1.S1_at--574--3131Chr04:32747393..32747417 (25 bp)
AATTATCGTCATTAGCGGTGTTCTC
LOC_Os04g55420
Os.52699.1.S1_at--137--10011Chr04:32747405..32747429 (25 bp)
TAGCGGTGTTCTCTGTGGCATATAA
LOC_Os04g55420
Os.52699.1.S1_at--968--9631Chr04:32747460..32747484 (25 bp)
TCAGTTCGGCACGTACGGTATGGAT
LOC_Os04g55420
Os.52699.1.S1_at--903--931Chr04:32747493..32747517 (25 bp)
AGGCAACAGTAATCTTCGGAGTATG
LOC_Os04g55420
Os.52699.1.S1_at--85--4671Chr04:32747682..32747706 (25 bp)
GCGTGCAATTCTCGCGACAAGGAAT
LOC_Os04g55420
Os.52699.1.S1_at--259--10611Chr04:32747748..32747772 (25 bp)
TTCTGTCATCCATTTCTGATTGTGA
LOC_Os04g55420
Os.52699.1.S1_at--1--6591Chr04:32747765..32747789 (25 bp)
GATTGTGAAGTCTCCACTTACCAAC
LOC_Os04g55420
Os.52699.1.S1_at--652--4131Chr04:32747778..32747802 (25 bp)
CCACTTACCAACTGCTTCAAAATTC
LOC_Os04g55420
Os.52699.1.S1_at--61--6811Chr04:32747839..32747863 (25 bp)
GTTTTGGGCCTGTCATCTAAATGTC
LOC_Os04g55420
Target Sequence 
GGACCTTTCCCACAATGAACTGAGTGGATTGATTCCATGGCAGCTGACCAAATTATCGTCATTAGCGGTGTTCTCTGTGG
CATATAACAACTTATCAGGATGTATTCCAAACTCTGGTCAGTTCGGCACGTACGGTATGGATAGCTACCAAGGCAACAGT
AATCTTCGGAGTATGTCAAAGGGNAAACATATGCTCTNCAGATTCAGGNAGCAGGTGACTTGCCATCGGAANGGAAGAGA
CAGTATGGCAGATGNATCCAGTGCTCTATGCAGTCAGNGCTGNCTCATTCGTCCTGGCNTTTTGGGGCACCGNTGCTTTC
TTGTTTTTCCATCCACTCGGACGGCGTGCAATTCTCGCGACAAGGAATTTGGTGTTTTGGTGTGGTCATTAACGATTTGA
AGTTTATTTTTCTGTCATCCATTTCTGATTGTGAAGTCTCCACTTACCAACTGCTTCAAAATTCTTGAGTCTATAATTTT
TAATCTAATGTCCATATTTTGTTTTGGGCCTGTCATCTAAATGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52699.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis