Browse Element(s) Details


OsAffx.14426.1.S1_at

Description tigr:9632.m05388
TID=OsAffx.14426.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5538011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55350OsAffx.20730.1.S1_x_at3/114+32705197..32707427retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g55350OsAffx.10020.1.S1_x_at1/114+32705197..32707427retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g55350OsAffx.828.1.S1_x_at1/114+32705197..32707427retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g55360Os.53947.1.S1_at11/114+32714173..32718141Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os04g55370OsAffx.26612.1.S1_at11/114+32721792..32723214hypothetical protein
LOC_Os04g55380OsAffx.14426.1.S1_at11/114+32727889..32728238hypothetical protein
LOC_Os04g55390OsAffx.26613.1.S1_at11/114+32729389..32730994hypothetical protein
LOC_Os04g55400OsAffx.14427.1.S1_at11/114+32733278..32734131hypothetical protein
LOC_Os04g55410Os.17903.1.S1_at11/114+32736641..32740875Glycerol kinase, putative, expressed
LOC_Os04g55410Os.54646.1.S1_at1/114+32736641..32740875Glycerol kinase, putative, expressed
LOC_Os04g55410Os.28089.1.S2_at1/114+32736641..32740875Glycerol kinase, putative, expressed
LOC_Os04g55420Os.52699.1.S1_at11/114+32744512..32747933Leucine Rich Repeat family protein, expressed
LOC_Os04g55430Os.20602.2.S1_x_at10/114+32749285..32751465hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14426.1.S1_at--300--10391Chr04:32728180..32728204 (25 bp)
TTTTGCTCACAACCAATATGCTCGT
LOC_Os04g55380
OsAffx.14426.1.S1_at--142--3111Chr04:32728166..32728190 (25 bp)
AATATGCTCGTTTCTGTTGCCACAC
LOC_Os04g55380
OsAffx.14426.1.S1_at--478--8811Chr04:32728152..32728176 (25 bp)
TGTTGCCACACGGTCTCCGGATAAC
LOC_Os04g55380
OsAffx.14426.1.S1_at--456--6471Chr04:32728133..32728157 (25 bp)
GATAACCTCCTAAACTCTTTTCCTG
LOC_Os04g55380
OsAffx.14426.1.S1_at--189--2731Chr04:32728108..32728132 (25 bp)
AAGAAACGGGTCACGTCTACTCAGC
LOC_Os04g55380
OsAffx.14426.1.S1_at--703--7151Chr04:32728094..32728118 (25 bp)
GTCTACTCAGCGTCAACTGTGCAGA
LOC_Os04g55380
OsAffx.14426.1.S1_at--560--6291Chr04:32728068..32728092 (25 bp)
GATGACCGAATACAAGCCCACGACT
LOC_Os04g55380
OsAffx.14426.1.S1_at--188--1671Chr04:32727980..32728078 (25 bp)
AGCCCACGACTGAGTATTTGCACAC
LOC_Os04g55380
OsAffx.14426.1.S1_at--967--6071Chr04:32727969..32727993 (25 bp)
GAGTATTTGCACACCTCATACCTGA
LOC_Os04g55380
OsAffx.14426.1.S1_at--872--5711Chr04:32727939..32727963 (25 bp)
GACTCTCTTTTTCTTGACAGCTCAA
LOC_Os04g55380
OsAffx.14426.1.S1_at--136--3511Chr04:32727919..32727943 (25 bp)
CTCAAGGTCCCGGATTCAGTTCCGA
LOC_Os04g55380
Target Sequence 
TTTTGCTCACAACCAATATGCTCGTTTCTGTTGCCACACGGTCTCCGGATAACCTCCTAAACTCTTTTCCTGAAGAAACG
GGTCACGTCTACTCAGCGTCAACTGTGCAGAAGATGACCGAATACAAGCCCACGACTGAGTATTTGCACACCTCATACCT
GACGCTGGACTCTCTTTTTCTTGACAGCTCAAGGTCCCGGATTCAGTTCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14426.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis