Browse Element(s) Details


Os.53947.1.S1_at

Description gb:AK100969.1
DB_XREF= gi:32986178
TID=Os.53947.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53947 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023143B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023143B02, full insert sequence.
FL= gb:AK100969.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5536011/11Ubiquitin carboxyl-terminal hydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55320Os.46715.1.S1_x_at1/114+32685604..32690154retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g55320Os.52609.1.S1_at1/114+32685604..32690154retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g55320OsAffx.22947.2.S1_x_at1/114+32685604..32690154retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g55320OsAffx.447.1.S1_at1/114+32685604..32690154retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g55330OsAffx.25945.1.S1_at1/114+32693096..32694428transposon protein, putative, unclassified
LOC_Os04g55330OsAffx.22896.1.S1_x_at1/114+32693096..32694428transposon protein, putative, unclassified
LOC_Os04g55340NANA4+32696731..32700780retrotransposon protein, putative, unclassified
LOC_Os04g55350OsAffx.20730.1.S1_x_at3/114+32705197..32707427retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g55350OsAffx.10020.1.S1_x_at1/114+32705197..32707427retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g55350OsAffx.828.1.S1_x_at1/114+32705197..32707427retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g55360Os.53947.1.S1_at11/114+32714173..32718141Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os04g55370OsAffx.26612.1.S1_at11/114+32721792..32723214hypothetical protein
LOC_Os04g55380OsAffx.14426.1.S1_at11/114+32727889..32728238hypothetical protein
LOC_Os04g55390OsAffx.26613.1.S1_at11/114+32729389..32730994hypothetical protein
LOC_Os04g55400OsAffx.14427.1.S1_at11/114+32733278..32734131hypothetical protein
LOC_Os04g55410Os.17903.1.S1_at11/114+32736641..32740875Glycerol kinase, putative, expressed
LOC_Os04g55410Os.54646.1.S1_at1/114+32736641..32740875Glycerol kinase, putative, expressed
LOC_Os04g55410Os.28089.1.S2_at1/114+32736641..32740875Glycerol kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004843molecular_functionubiquitin-specific protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53947.1.S1_at--463--3291Chr04:32714728..32714752 (25 bp)
CAAATGTGATGATGCCTGGGTAACC
LOC_Os04g55360
Os.53947.1.S1_at--493--5931Chr04:32714694..32714718 (25 bp)
GAGCATACTGTCAGAACCTCTCAGG
LOC_Os04g55360
Os.53947.1.S1_at--514--3571Chr04:32714669..32714693 (25 bp)
CATACATGCTCTTCTATGTGCAGAA
LOC_Os04g55360
Os.53947.1.S1_at--559--271Chr04:32714557..32714581 (25 bp)
ATAGTCATCAGAGAGCGCACCATGT
LOC_Os04g55360
Os.53947.1.S1_at--927--4111Chr04:32714542..32714566 (25 bp)
CGCACCATGTAATTCCATCCAGAGA
LOC_Os04g55360
Os.53947.1.S1_at--668--171Chr04:32714504..32714528 (25 bp)
ATTTGGACAGCCACGAAGTCGGATG
LOC_Os04g55360
Os.53947.1.S1_at--50--1631Chr04:32714335..32714359 (25 bp)
AGCTGGAAGCATTACACTGTTTTAC
LOC_Os04g55360
Os.53947.1.S1_at--1114--3171Chr04:32714309..32714333 (25 bp)
CAATTGGTTGCGAGGGTGTTCTAAC
LOC_Os04g55360
Os.53947.1.S1_at--824--6711Chr04:32714292..32714316 (25 bp)
GTTCTAACCCCGATAATGCTGGTGT
LOC_Os04g55360
Os.53947.1.S1_at--693--8871Chr04:32714199..32714223 (25 bp)
TGATGTGTTCCTTTCAGTAGTTGAA
LOC_Os04g55360
Os.53947.1.S1_at--194--5271Chr04:32714177..32714201 (25 bp)
GAATGCCATCTCTACTAGCTGATAG
LOC_Os04g55360
Target Sequence 
CAAATGTGATGATGCCTGGGTAACCAGAGTTGAAGAGCATACTGTCAGAACCTCTCAGGCATACATGCTCTTCTATGTGC
AGAAGACACTTTACTACAAAGCTTGTGAAAGAGCAACTGCTGTCTGATTTGGAACAAATATGGCTGACATTATTCTGATC
AGCCACAAAATATAGTCATCAGAGAGCGCACCATGTAATTCCATCCAGAGAAAAAGTGCCTGTCATTTGGACAGCCACGA
AGTCGGATGAGATTCAACTTTTTTGCATGCAATAACCTTTGGATTCGGTTGACCGAGGGTTTTTGGCAATTTTCTCAATA
GCCACCACCCAAAGGAAGAAGGTCAATTTTATTTGCTCAATTTATCTTATTACCTGATTTATGTGATCAATTAAGCTGGA
AGCATTACACTGTTTTACACAATTGGTTGCGAGGGTGTTCTAACCCCGATAATGCTGGTGTTTAAGATTATATTGAGCAA
GGAAATAAGTGGAATGTGTAGAAGTGAGAGAAAAGGGAACCGAATTTTTTGATGTGTTCCTTTCAGTAGTTGAATGCCAT
CTCTACTAGCTGATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53947.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis